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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACCGCCTGGTACGGGGAAGACAATGCTGGCAAAAGCTGTAGCAACCGAGGCTGGGGCAAACTTTATCAATATTTCAATGTCCAGCATTACTTCAAAGgtattgatcacttaaaacggttacctgactctatagtgttttctttgagattagacttgacttgagatttcgtgtag

Basic information

species Arabidopsis thaliana
transcript AT1G02890.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G02890.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: LOC_Os07g47530.2 (Oryza sativa), 5'ss of exon 22
TGGACCGCCTGGTACGGGGAAGACAATGCTGGCAAAAGCTGTAGCAACCGAGGCTGGGGCAAACTTTATCAATATTTCAATGTCCAGCATTACTTCAAAGgtattgatcacttaaaacggttacctgactctatagtgttttc-tttgagattagacttgacttgagatttcgtgtag----
||| || ||||||||||||||||| ||||| || |||||||| ||||| |||||||| || || |||||||| || |||||||| || ||| ||||||||||| |       || | |  |  |     || | | ||||  | | |   ||    |||    ||| || |  |   |    
TGGCCCACCTGGTACGGGGAAGACCATGCTTGCTAAAGCTGTTGCAACAGAGGCTGGCGCCAATTTTATCAACATATCAATGTCTAGTATTGCTTCAAAGgtactccctttatagagctat-gcagagttccagattgttcacatcttgaatactccttttgctgatatctgattctgacag

upper sequence: AT1G02890.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: LOC_Os03g22420.1 (Oryza sativa), 5'ss of exon 22
TGGACCGCCTGGTACGGGGAAGACAATGCTGGCAAAAGCTGTAGCAACCGAGGCTGGGGCAAACTTTATCAATATTTCAATGTCCAGCATTACTTCAAAGgtattgatcacttaaaacggttacc-tgactctatagtgttttctttgagattagacttgacttgagatttcgtgtag-----------
||| ||||||||||| || ||||||||||| || |||||||| || || |||||||| || || || || ||||| |||||||| |||||  |||||||||||||  | |||  ||| | || |  | | || || || || | ||||   || |     |  ||| |  | |||||            
TGGCCCGCCTGGTACAGGAAAGACAATGCTTGCCAAAGCTGTGGCTACAGAGGCTGGTGCGAATTTCATAAATATATCAATGTCGAGCATCTCTTCAAAGgtatt--ttact--aaatgattgctattagtccatggttttgtttttgcattttgggc--atctgaaacattgtgtaccattaccacag

upper sequence: AT1G02890.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 22
TGGACCGCCTGGTACGGGGAAGACAATGCTGGCAAAAGCTGTAGCAACCGAGGCTGGGGCAAACTTTATCAATATTTCAATGTCCAGCATTACTTCAAAGgtattgat---------cacttaaaacggttac-ctgactctatagtgttttctttgagattagacttgacttgagatttcgtgtag
||| || ||||| || || ||||| ||||| || |||||||| ||||| |||||||| || || |||||||| || |||||||| |||||| ||||||||||| |  |          ||| |  | | ||   |    | |  |||  ||  |       |    |  ||     |  |     ||
TGGTCCACCTGGCACCGGTAAGACCATGCTTGCCAAAGCTGTTGCAACAGAGGCTGGTGCTAATTTTATCAACATATCAATGTCAAGCATTGCTTCAAAGgtacttgtgcaacgttatactcatcaagtttgttcccgatttggagtacttattactttgctgatttcaaccctgtaactataacag

upper sequence: AT1G02890.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 21
TGGACCGCCTGGTACGGGGAAGACAATGCTGGCAAAAGCTGTAGCAACCGAGGCTGGGGCAAACTTTATCAATATTTCAATGTCCAGCATTACTTCAAAGgtattgatcacttaaaacggttacctgactctatagtgt-tttctttgagattagacttgacttgag--atttcgtgtag----------
||| || ||||| || || || |||||||| ||||| ||||||||||| || ||||| ||||| || || || |||||||||||||||||||||||||||||||| ||    |||    ||||| |   | | | |||| |||| |||          ||||  ||   || | || | |          
TGGGCCCCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATTAACATTTCAATGTCCAGCATTACTTCAAAGgtattaatgttgtaa----gttacttttttttgtggtgtatttccttgtatgcttcagtgacaagaaaaatatggttttgtttgttgcag

upper sequence: AT1G02890.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GLYMA02G17410.1 (Glycine max), 5'ss of exon 17
TGGACCGCCTGGTACGGGGAAGACAATGCTGGCAAAAGCTGTAGCAACCGAGGCTGGGGCAAACTTTATCAATATTTCAATGTCCAGCATTACTTCAAAGgtattgatcacttaaaacggttacctgactctatagtgttttctttga---gattagacttgacttgagatttcgtgtag-----
||| || ||||| || || || |||||||| ||||| ||||||||||| || ||||| ||||| || || || |||||||||||||||||||||||||||||||  ||    ||||    ||   |   | | || |   || | ||      ||| |    |     | ||| || |       
TGGGCCCCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATTAACATTTCAATGTCCAGCATTACTTCAAAGgtatcaatattgtaaattactttttttgttgtgtatttccttgtatgcttcagttacaagaaaaacatggttttgtttgttgcag

upper sequence: AT1G02890.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GLYMA10G02410.1 (Glycine max), 5'ss of exon 18
TGGACCGCCTGGTACGGGGAAGACAATGCTGGCAAAAGCTGTAGCAACCGAGGCTGGGGCAAACTTTATCAATATTTCAATGTCCAGCATTACTTCAAAGgtattgatcac---ttaaaacggt--tacctgactctatagtgt-tttctttgagattagacttgac---ttgagatttcgtgtag---
||| || ||||| || || || |||||||| ||||| ||||||||||| || ||||| ||||| ||||| || |||||||||||||||||||| || ||||||||  |  |   || |||| ||  | |   ||| | || |   |||| || | |   |||  ||    |   | |||  ||| |   
TGGCCCTCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTTATTAACATTTCAATGTCCAGCATTACGTCCAAGgtattagttgcaaatttaaacagttttgctctactttgtatttcctttcattcataagtgacaggatagatattgtttttttgttgcag

upper sequence: AT1G02890.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: GLYMA02G17400.1 (Glycine max), 5'ss of exon 18
TGGACCGCCTGGTACGGGGAAGACAATGCTGGCAAAAGCTGTAGCAACCGAGGCTGGGGCAAACTTTATCAATATTTCAATGTCCAGCATTACTTCAAAGgtattgatcac---ttaaaacggtt--acctgactctatagtgttttctttgagatta---gacttgac-ttgagatttcgt-gtag
||| || ||||| || || || |||||||| ||||| ||||| ||||| || ||||| ||||| ||||| || |||||||||||||||||||| || ||||||||  |  |   || |||| |||   |   ||||| || | |  | |     ||||   |||  ||  |||   ||| || | ||
TGGCCCCCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTGGCAACTGAAGCTGGAGCAAATTTTATTAACATTTCAATGTCCAGCATTACATCCAAGgtattagttgcaaatttaaactgttttgctctactctgtattttcctttcattcattaagtgacaggatattgtttttttgttgcag

upper sequence: AT1G02890.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 21
TGGACCGCCTGGTACGGGGAAGACAATGCTGGCAAAAGCTGTAGCAACCGAGGCTGGGGCAAACTTTATCAATATTTCAATGTCCAGCATTACTTCAAAGgta--ttgatcacttaaaacggttacc---tgactctatagtgt---tttctttgagattagacttgac---ttgagatttcgtgtag
||| || ||||| || || || |||||||| || || || || ||||| ||||| || ||||| |||||||| || |||||||| || || ||||||||||||  |   |   | |||| ||| ||       |||| |  ||    | |  ||  ||  | | |||||    ||| ||| | || ||
TGGGCCTCCTGGGACTGGAAAAACAATGCTTGCGAAGGCGGTTGCAACTGAGGCAGGTGCAAATTTTATCAACATATCAATGTCTAGTATCACTTCAAAGgtaaatatgtgcatcaaaatggtgactatgcagctctcttttgcaagtcttgttttgaaaatatttgacatcctgatattgcttgcag

upper sequence: AT1G02890.1 (Arabidopsis thaliana), 5'ss of exon 21
lower sequence: EFJ31084 (Selaginella moellendorffii), 5'ss of exon 9
TGGACCGCCTGGTACGGGGAAGACAATGCTGGCAAAAGCTGTAGCAACCGAGGCTGGGGCAAACTTTATCAATATTTCAATGTCCAGCATTACTTCAAAGgtattgatcacttaaaacg--gttacctgactctatagtgttttctttgagattagacttgacttgagatttcgtgtag
||| || || || || || ||||| ||||| || || || || || || |||||||| ||||| || |||||||||||||||||||  ||| | || || |||   | ||||||  |||   |    |     | ||  |||||||||      ||                       
TGGTCCTCCAGGAACTGGTAAGACCATGCTTGCTAAGGCGGTTGCTACAGAGGCTGGTGCAAATTTCATCAATATTTCAATGTCCACAATTGCATCTAAAgta---agcacttaccacgtgatagtgttcaagtttaccgttttctttcttcgcag-----------------------