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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGAGGTGATTTAGAGTACTCTGGTTCACCAACAGAAAAGGCCATTCTTGGCTGGGGAGTTAAGgtttaatttttgactctttctcgttttctagttcgaaattttatacgtttgagttaaagaatgatttttctctttcag

Basic information

species Arabidopsis thaliana
transcript AT5G57110.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G57110.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: EFJ22392 (Selaginella moellendorffii), 5'ss of exon 16
GGTGGAGGTGATTTAGAGTACTCTGGTTCACCAACAGAAAAGGCCATTCTTGGCTGGGGAGTTAAGgttt----aatttttgactctttctcgttt-tctagttcgaaattttatacgtttgagttaaagaatgatttttctctttcag
| |||||| |||   ||   | | |||   ||||| |||||||||||||||||||||||| | || || |    |  ||||   || | || ||   |   ||||       | ||  |||  | ||                      
GATGGAGGCGATCCGGAAGTCACAGGTAGTCCAACCGAAAAGGCCATTCTTGGCTGGGGATTAAAAgtatgtgaagcttttacgtcgtccttgtcgataccgttccctgacatgtatatttttgatag---------------------

upper sequence: AT5G57110.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: EFJ25508 (Selaginella moellendorffii), 5'ss of exon 17
GGTGGAGGTGATTTAGAGTACTCTGGTTCACCAACAGAAAAGGCCATTCTTGGCTGGGGAGTTAAGgtttaatttttgactctttctcgttttctagttcgaaattttatacgtttgagttaaagaatgatttttctctttcag
| |||||| |||   ||   | | |||   ||||| |||||||||||||||||||||||| | || || |      |||  ||||  |||  ||     ||     | | | || |   ||  | |                  
GATGGAGGCGATCCGGAAGTCACAGGTAGTCCAACCGAAAAGGCCATTCTTGGCTGGGGATTAAAAgtatg-----tgaagcttttacgtcgtccttaccgttccctgacatgtatatttttgatag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116481548|gb|EG524140.1|EG524140
EST:     AGTACTCTGGTTCACCAACAGAAAAGGCCATTCTTGGCTGGGGAGTTAAG                         CTGGGAATGAATTTCGAGACAGCCCGATCGCAGTCTTCTATTCTTCATGCT
genomic: AGTACTCTGGTTCACCAACAGAAAAGGCCATTCTTGGCTGGGGAGTTAAGgtttaatttt ... tctctttcagCTGGGAATGAATTTCGAGACAGCCCGATCGCAGTCTTCTATTCTTCATGCT
EST: gi|164097512|gb|ES211449.1|ES211449
EST:     AGTACTCTGGTTCACCAACAGAAAAGGCCATTCTTGGCTGGGGAGTTAAG                         CTGGGAATGAATTTCGAGACAGCCCGATCGCAGTCTTCTA
genomic: AGTACTCTGGTTCACCAACAGAAAAGGCCATTCTTGGCTGGGGAGTTAAGgtttaatttt ... tctctttcagCTGGGAATGAATTTCGAGACAGCCCGATCGCAGTCTTCTA