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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGATTCTTGTTCATGGGAGGTATTCATATAACCGGACAGCATTTTTGTCCCAGTATTCCTTCTACAAATCGTTGTTGATATGCTTCATCCAGATTTTgtaagtttattatctcagatatgttctcagtagatatcattcaagtcgttcatgaaatactgacaacagaatctatgtag

Basic information

species Arabidopsis thaliana
transcript AT5G44240.2
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G44240.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: LOC_Os11g25980.2 (Oryza sativa), 5'ss of exon 21
GACTGATTCTTGTTCATGGGAGGTATTCATATAACCGGACAGCATTTTTGTCCCAGTATTCCTTCTACAAATCGTTGTTGATATGCTTCATCCAGATTTTgtaagttta-ttatctcagatatgttctcagtagatatcattcaagtcgttcatgaaatactgacaacag--aatctatgtag-------------------------------------------------------
| ||||||||||| |||||| | || ||||| ||||| ||||| ||| | || |||||||| |||||||| || ||||| || ||||| ||||||||  |||||||  |  |   || |  || || |   |       |||  |||  || ||| |||| |     |||   || ||| |                                                         
GGCTGATTCTTGTCCATGGGCGATACTCATACAACCGTACAGCTTTTCTTTCTCAGTATTCTTTCTACAAGTCATTGTTAATTTGCTTTATCCAGATACTgtaagtcaaacttagtctggcatctttttgct------tatttgagttcttaatgcaatagtattctcagtccatttatctgtaaaagaatgctggatatatgcttctcttatcaatgttctcattttatgcatgcag

upper sequence: AT5G44240.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: EFJ28965 (Selaginella moellendorffii), 5'ss of exon 19
GACTGATTCTTGTTCATGGGAGGTATTCATATAACCGGACAGCATTTTTGTCCCAGTATTCCTTCTACAAATCGTTGTTGATATGCTTCATCCAGATTTTgtaagtttattatctcagatatgttctcagtagatatcattcaagtcgttcatgaaatactgacaacagaatctatgtag
|  |||| ||||| |||||||| || ||||||||  |||  ||||||||||| ||||| ||  ||||||||||  || |  |||||||||| ||||| ||||||| || || | |    | ||  |  |   ||| ||  | | |   ||| |    |  |          ||||     
GGTTGATACTTGTACATGGGAGATACTCATATAATAGGAGCGCATTTTTGTCACAGTACTCAATCTACAAATCACTGGTCTTATGCTTCATTCAGATCTTgtaagcttttttttttttttttg--catatcggatttcgctgatgcttttccttttttggttgttttttcctctag----

upper sequence: AT5G44240.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: EFJ13671 (Selaginella moellendorffii), 5'ss of exon 19
GACTGATTCTTGTTCATGGGAGGTATTCATATAACCGGACAGCATTTTTGTCCCAGTATTCCTTCTACAAATCGTTGTTGATATGCTTCATCCAGATTTTgtaagtttattatctcagatatgttctcagtagatatcattcaagtcgttcatgaaatactgacaacagaatctatgtag
|  |||| ||||| |||||||| || ||||||||  |||  ||||||||||| ||||| ||  ||||||||||  || |  |||||||||| ||||| ||||||| || ||   |     || |        ||| ||  | | |   ||| |    |  |          ||||     
GGTTGATACTTGTACATGGGAGATACTCATATAATAGGAGCGCATTTTTGTCACAGTACTCAATCTACAAATCACTGGTCTTATGCTTCATTCAGATCTTgtaagcttttttctttttgcatatc------ggatttcgctgatgcttttccttttttggttgttttctcctctag----