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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGCGATATTCTTGAACTACACAAGAAGTTCCTGGAGCTCTCTGGTGGTATTAACAGAATTTTTGAGCTCGATGAGTTTTTGGATGCTTCTCAGTCAGgtactacagcatatataggttcacactttggctaggcgatgcaaaatcttggtgctttatgtaacatatatgaagtcattattcagattgtgatcttttcatgaactctttccatcattacctaatgtctgtacttgagttgatcatattcgttatgtccaactattttag

Basic information

species Arabidopsis thaliana
transcript AT4G39850.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G39850.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: LOC_Os05g01700.1 (Oryza sativa), 5'ss of exon 17
TTTGGCGATATTCTTGAACTACACAAGAAGTTCCTGGAGCTCTCTGGTGGTATTAACAGAATTTTTGAGCTCGATGAGTTTTTGGATGCTTCTCAGTCAGgtactacagcatatataggttcacactttggctaggcgatgcaaaatcttggtgctttatgtaacatatatgaagtcattattcagattgtgatcttttcatgaactctttccatcattacctaatgtctgtacttgagttgatcatattcgttatgtccaactattttag
||||| || ||||||||  ||||||| |||||||| || || |||||||| |||||| | ||||||||||| || ||| || |   ||  |||||    |||| ||   || ||    |   |    ||   ||     | |   |  ||  || |  | | |   | |   |   | | || || | |  | |    | || |                                                                   
TTTGGTGACATTCTTGACTTACACAAAAAGTTCCTTGAACTTTCTGGTGGGATTAACCGGATTTTTGAGCTTGAGGAGCTTCTTCGTGTATCTCAAAGGGgta-tatttcagat----ggctatgacttcattaattttttctttaatttcttggtgaaagcattcttttccagtacttcatacatagtagggtacagtgatcat------------------------------------------------------------------

upper sequence: AT4G39850.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GRMZM2G074241_T01 (Zea mays), 5'ss of exon 3
TTTGGCGATATTCTTGAACTACACAAGAAGTTCCTGGAGCTCTCTGGTGGTATTAACAGAATTTTTGAGCTCGATGAGTTTTTGGATGCTTCTCAG----TCAGgtactacagcatatataggttcacactttggctaggcgatgcaaaatcttggtgctttatgtaacatatatgaagtcattattcagattgtgatcttttcatgaactctttccatcattacctaatgtctgtacttgagttgatcatattcgttatgtccaactattttag
||||| |||||||||||  |||||||||||||||| || |||||||||||||||||||| || |||||||| || ||| || |  | || || ||       | || |||   ||||   |   |       |   |||       |  |  |||||  || |   || || |  | |||       |  || || |  ||    | |  ||||||  |  | || | ||  || | |||| |      ||||   |  | | |   |  | |||
TTTGGTGATATTCTTGAGTTACACAAGAAGTTCCTTGAACTCTCTGGTGGTATTAACAGGATATTTGAGCTTGAGGAGCTTCTACAGGCATCACAAAGCAgtaagtgctagtccatactgaaacttg-gtagtaaatagtaagcatagcaggttggttgttaactgaatatttgggtagtt----cacgaatggtaagtttgggtttatatctttctcttttgacgttatcact-tgcttgcgcctga-atatggatggtctgctgttcatctag

upper sequence: AT4G39850.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GRMZM2G060045_T01 (Zea mays), 5'ss of exon 19
TTTGGCGATATTCTTGAACTACACAAGAAGTTCCTGGAGCTCTCTGGTGGTATTAACAGAATTTTTGAGCTCGATGAGTTTTTGGATGCTTCTCAGTCAGgtac-tacagcatatataggttcac---actttggctaggcgatgcaaaatcttggtgctttatgtaacatatatgaagtcattattcagattgtgatcttttcatgaactctttccatcattacctaatgtctgtacttgagttgatcatattcgttatgtccaactattttag
|| ||||| ||||||||  |||| ||||||||||| || || |||||||| |||||| | || |||||||| || ||||||          ||||   | |||  | |||  |   | | || |    ||  | | ||  ||||  ||| |    ||      | ||| || | | | || || ||| | || ||    || |||||                                                                    
TTCGGCGACATTCTTGAGTTACATAAGAAGTTCCTTGAACTTTCTGGTGGCATTAACCGGATCTTTGAGCTTGAGGAGTTTACACGCTTCGCTCAAAGAAgtaagttcagtttgcttggatttaatagacaatag-taatcgatttaaatttccagt------tttaatatttttca-gtaatgatt-atatagttggtttgtcatgtg------------------------------------------------------------------