1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
TCTTTCTCTGATGGACGCATACTCCTTGAGCGTTCAACATGAGCAGACCACTCTACAGATTCTACAAGCAAAACTAGGCCCTGAGGATCTTCGGACACAGgtgcttaattagttatgatttacagggagtttcagttaaaatgtgtttcttacgttctaaaactatgttag
species | Arabidopsis thaliana |
transcript | AT4G28080.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: CTCTACAGATTCTACAAGCAAAACTAGGCCCTGAGGATCTTCGGACACAG GATGCGGCTGCGEST: gi|116474176|gb|EG516768.1|EG516768
genomic: CTCTACAGATTCTACAAGCAAAACTAGGCCCTGAGGATCTTCGGACACAGgtgcttaatt ... actatgttagGATGCGGCTGCG
EST: ATCTTCGGACACAG GATGCGGCTGCGTGGCTTGAATATTTCGAGTCCAAAGCTCTGGAACAGCAAEST: gi|124986563|gb|EL059075.1|EL059075
genomic: ATCTTCGGACACAGgtgcttaatt ... actatgttagGATGCGGCTGCGTGGCTTGAATATTTCGAGTCCAAAGCTCTGGAACAGCAA
EST: GATCTTCGGACACAG GATGCGGCTGCGTGGCTTGAATATTTCGAGTCCAAAGCTCTGGAACAGCAAEST: gi|116474175|gb|EG516767.1|EG516767
genomic: GATCTTCGGACACAGgtgcttaatt ... actatgttagGATGCGGCTGCGTGGCTTGAATATTTCGAGTCCAAAGCTCTGGAACAGCAA
EST: GGCCCTGAGGATCTTCGGACACAG GATGCGGCTGCGTGGCTTGAATATTTCGAGTCCAAAGCTCTGGAACAGCAA
genomic: GGCCCTGAGGATCTTCGGACACAGgtgcttaatt ... actatgttagGATGCGGCTGCGTGGCTTGAATATTTCGAGTCCAAAGCTCTGGAACAGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTTCTCTGATGGACGCATACTCCTTGAGCGTTCAACATGAGCAGACCACTCTACAGATTCTACAAGCAAAACTAGGCCCTGAGGATCTTCGGACACAGgtgcttaattagttatgatttacagggagtttcagttaaaatgtgtttcttacgttctaaaactatgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT