1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
GTGATTGAGTTTCAAGATCATCCATTCTATGTTGGAGTTCAGTTTCATCCAGAATTTAAGTCAAGACCCACTAGACCTTCTCCTCTGTTTTTAGgcaagtcttgagaaacacacttttgtctcatattcctgaagacgggacattattattttaaaagctcattagattgtgatgttacag
species | Arabidopsis thaliana |
transcript | AT4G02120.1 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
EST: TCATCCAGAATTTAAGTCAAGACCCACTAGACCTTCTCCTCTGTTTTTAG GGTTTATATTGGCTGCGAGGAAGCTTCTTCAAGCCCATTTAAGCAATTGAGEST: gi|164101688|gb|ES046253.1|ES046253
genomic: TCATCCAGAATTTAAGTCAAGACCCACTAGACCTTCTCCTCTGTTTTTAGgcaagtcttg ... gatgttacagGGTTTATATTGGCTGCGAGGAAGCTTCTTCAAGCCCATTTAAGCAATTGAG
EST: AAGACCCACTAGACCTTCTCCTCTGTTTTTAG GGTTTATATTGGCTGCGAGGAAGCTTCTTCAAGCCCCATTTAAGCAATTGAEST: gi|86086399|gb|DR382158.1|DR382158
genomic: AAGACCCACTAGACCTTCTCCTCTGTTTTTAGgcaagtcttg ... gatgttacagGGTTTATATTGGCTGCGAGGAAGCTTCTTCAAGCCC-ATTTAAGCAATTGA
EST: TCATCCAGAATTTAAGTCAAGACCCACTAGACCTTCTCCTCTGTTTTTAG GGTTTATATTGGCTGCAAGGAAGCTTCTTCAAGCCCATTTAAGCAATTGAG
genomic: TCATCCAGAATTTAAGTCAAGACCCACTAGACCTTCTCCTCTGTTTTTAGgcaagtcttg ... gatgttacagGGTTTATATTGGCTGCGAGGAAGCTTCTTCAAGCCCATTTAAGCAATTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATTGAGTTTCAAGATCATCCATTCTATGTTGGAGTTCAGTTTCATCCAGAATTTAAGTCAAGACCCACTAGACCTTCTCCTCTGTTTTTAGgcaagtcttgagaaacacacttttgtctcatattcctgaagacgggacattattattttaaaagctcattagattgtgatgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC