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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAGGAATCGGTGGAGTAGAAGAAGTTACATTTCTCTATAGATTGACTCCTGGTGCATGTCCTAAAAGTTATGGAGTTAACGTTGCTCGGTTAGCTGgtaagaacactgaattctctactccatcacctctactcagttaaacagaagcagtcactcatcaaattgttttggttttaatctccatag

Basic information

species Arabidopsis thaliana
transcript AT4G02070.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G02070.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GRMZM2G421541_T01 (Zea mays), 5'ss of exon 20
GGAGAAGGAATCGGTGGAGTAGAAGAAGTTACATTTCTCTATAGATTGACTCCTGGTGCATGTCCTAAAAGTTATGGAGTTAACGTTGCTCGGTTAGCTGgtaa------gaacactgaattctctactccatcacctctactcagttaaacagaagcagtcactcatcaaattgttttggttttaatctccatag-----------------------------------
|  || ||| | || ||  | |||||||| || || || |||||||| || |||||||| || |||||||||||||| || || |||||||| || || |||||          | || | |   | ||  ||  | ||| ||| |  |  || | ||  |   || ||     || ||   || |  |   |||                                    
GTCGAGGGAGTAGGAGGTCTGGAAGAAGTGACTTTCCTTTATAGATTAACACCTGGTGCTTGCCCTAAAAGTTATGGTGTAAATGTTGCTCGATTGGCAGgtaattctcaagctaatgcacttgtttcttaatgtcttctgctctga-attcaaatgctctttttcctcgggccgtgttatgttgacacataataccatgcccatttgctgtcttcgctcttgatactcag

upper sequence: AT4G02070.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: Vv07s0005g01370.t01 (Vitis vinifera), 5'ss of exon 20
GGAGAAGGAATCGGTGGAGTAGAAGAAGTTACATTTCTCTATAGATTGACTCCTGGTGCATGTCCTAAAAGTTATGGAGTTAACGTTGCTCGGTTAGCTGgtaagaacactgaattctctactccatcacctct------actcagttaaacaga--agcagtcactcatcaaattgttttggttttaatctccatag----------------------------------------------------------------------------------------------------
||| | ||| | || || || || ||||| || ||||| || || ||||  ||||||||||| |||||||| ||||| || || ||||| ||| |||||||||||    ||   |  | |  |   || | | |      ||| |  | | ||||  |  | |   |    ||     ||||   | ||||| | |                                                                                                      
GGAAAGGGAGTTGGAGGCGTGGAGGAAGTAACTTTTCTTTACAGGTTGAGGCCTGGTGCATGCCCTAAAAGCTATGGCGTCAATGTTGCACGGCTAGCTGgtaaggtttctttctattgttatttttctcttattgaggaacttacattagcagactattaatt-tttgctaacccaatttgtgataaatcttcctgatatggctgtttaattcatgtgcctaatcatgggctacagtcattgttgtcttttttactaatatatgagatttcctgtgtcttactggtacacctttcag