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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCACAAAGGATTGCAGATGCTGTTCAACAAATGGCCAACGCATCCCGTGGTACCAGTAGCACTGGGTCGGTGTCTCTATATGTCGAACTGCTGAACAAgtaagtttctctttaagttgcatctatttagtacctactacctacgctgcaaaatgcttgcaatcgagtactttcccagttgtcactgctttctcttaatggttttacgagtcaaatgcag

Basic information

species Arabidopsis thaliana
transcript AT3G51310.1
intron # 20
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86073286|gb|DR369043.1|DR369043
EST:     GCACTGGGTCGGTGTCTCTATATGTCGAACTGCTGAACAA                         GTATCTCTACTTCCTGGAGAAAGGAAACCAACAAGTAACAGGCGATACAAT
genomic: GCACTGGGTCGGTGTCTCTATATGTCGAACTGCTGAACAAgtaagtttct ... tcaaatgcagGTATCTCTACTTCCTGGAGAAAGGAAACCAACAAGTAACAGGCGATACAAT
EST: gi|19740930|gb|AU226283.1|AU226283
EST:     GGTACCAGTAGCACTGGGTCGGTGTCTCTATATGTCGAACTGCTGAACAA                         GTATCTCTACTTCCTGGAGAAAGGAAACCAACAAGTAACAGGCGATACAAT
genomic: GGTACCAGTAGCACTGGGTCGGTGTCTCTATATGTCGAACTGCTGAACAAgtaagtttct ... tcaaatgcagGTATCTCTACTTCCTGGAGAAAGGAAACCAACAAGTAACAGGCGATACAAT