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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTCTTCTCTGCATGGAGGGATTTAAAGCTGGAATACATATTGCTTATGTTCTTGGAATGGATACAATGCGATATGCATTTCTAACATCGCTTGTCAGgtaaactcgtaaaacttatttcacactcccttttatgtttagtgttgaatatatatttaggttgcattgtatattggcagtttgtgtagaatattgtgccattgctgcgcaatgcatgttgactatttttctttgaattgtccatag

Basic information

species Arabidopsis thaliana
transcript AT3G43300.2
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G43300.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA13G17610.1 (Glycine max), 5'ss of exon 21
GGATTCTTCTCTGCATGGAGGGATTTAAAGCTGGAATACATATTGCTTATGTTCTTGGAATGGATACAATGCGATATGCATTTCTAACATCGCTTGTCAGgtaaa----ctcgtaaaacttatttcacactccc-----------ttttatgtttagtgttgaatatata-tttaggttgcattgt----atattggcagtttgtgtagaatat-tgtgccattgctgcgcaatgcatgttgactatttt--tctttga-attgtccatag------------------------------
|  || || | |  |||||||||||||||||||| ||||||||| | | ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |    |  |||   |  ||  ||||  ||               | || |||   |    ||| |  |||   ||  ||| |    || ||| ||   |  |||   |   ||     | | || | ||| || | || | | |||  | ||||  |  ||  | |                               
GTGTTGTTTTGTTGATGGAGGGATTTAAAGCTGGCATACATATTACGTTTGTGCTTGGAATGGATACCATGCGATATGCATTTCTAACATCTCTTGTCAGgtatatgttcctgtagcccccatcccacatccctaaaaaaactgtccctgtgattatcataagttatttgcttttttttttattattattattttgacatgctaggtaagtttcatgctttgtggatgag-aatacaggatggcaactttgatgtttggtacagttgacaatgttcattagtttctttgttgacacctcag

upper sequence: AT3G43300.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA17G04890.1 (Glycine max), 5'ss of exon 21
GGATTCTTCTCTGCATGGAGGGATTTAAAGCTGGAATACATATTGCTTATGTTCTTGGAATGGATACAATGCGATATGCATTTCTAACATCGCTTGTCAGgtaaa------ctcgtaaaacttatttcacactcccttttatgtt-tagtgttgaatat-----atatttaggttgcattgtatattggca-gtttgtgtagaatattgtgccattgctgcgcaatgcatgttgactatttttctttgaattgtccatag-------------------------------
|  || || | |  |||||||||||||||||||| ||||||||| | | ||| |||||||||||||| ||||| ||||||||||||||||| || |||||||| |      |  |||   |  ||  ||||  ||     |   | | |  |||| |||      |  || | ||    | ||| ||| || | | | | || |   ||     |   || | |  | |||   ||| |  |  || |    ||  | |                                
GTGTTGTTTTGTTGATGGAGGGATTTAAAGCTGGCATACATATTACGTTTGTGCTTGGAATGGATACCATGCGTTATGCATTTCTAACATCTCTGGTCAGgtatatgtgttcctgtaccccccatcccacatccctcaaaaaactgtcgctttgattatcgtaagttatttgctttttctttattttgacatgctagggaagtagcatgctttgtgcatgagtacaggatgacaactttgatgtttggtgcagttgacaatattcatttagtttctttgttgacacctcag

upper sequence: AT3G43300.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 21
GGATTCTTCTCTGCATGGAGGGATTTAAAGCTGGAATACATATTGCTTATGTTCTTGGAATGGATACAATGCGATATGCATTTCTAACATCGCTTGTCAGgtaaactcgtaaaacttatttcacactcccttttatgtttagtgttgaatatatatttaggttgcattgtatattggcagtttgtgtagaatattgtgccatt-gctgcgcaatgcatgttgactatttttctttgaattgtccatag
|| |||||||||| ||||| ||||||| |||||| || || ||| |  ||||| ||||||||||||| ||||| ||||| ||||| ||||| || |||||||||| ||          |||   | |   |  || |   || |  ||| |   ||| | |  ||  || |    | ||       || |||    ||  ||| | |  |   ||                                 
GGGTTCTTCTCTGTATGGAAGGATTTAGAGCTGGCATTCACATTACACATGTTATTGGAATGGATACCATGCGCTATGCTTTTCTGACATCACTAGTCAGgtaaaatccc--------ttttttattttttgataggcaaaggggagaaaa---attaacgccgc-ctgcaagaggacaca----ataaaattccttgttatttggtttgttttgt--------------------------------