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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTATCAAGAACATGACTTCACTCAAACATCTAGACATATCCAACAACAACATTTCAAGTCTTCCTCCAGAACTGgtaagtctctgttgctttttttaactgaaacatatacatgtaaaatgtttagtaacaagtcatgtgttgttccttag

Basic information

species Arabidopsis thaliana
transcript AT3G15410.2
intron # 20
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164067489|gb|ES092624.1|ES092624
EST:     TTCCTCCAGAACTG                         GGTTTGCTTGAGCCTACACTTGAGGTTCTACGACTTGACGGGAACCCATTA
genomic: TTCCTCCAGAACTGgtaagtctct ... tgttccttagGGTTTGCTTGAGCCTACACTTGAGGTTCTACGACTTGACGGGAACCCATTA
EST: gi|124921698|gb|EL000060.1|EL000060
EST:     TTCCTCCAGAACTG                         GGTTTGCTTGAGCCTACACTTGAGGTTCTACGACTTGACGGGAACCCATTA
genomic: TTCCTCCAGAACTGgtaagtctct ... tgttccttagGGTTTGCTTGAGCCTACACTTGAGGTTCTACGACTTGACGGGAACCCATTA
EST: gi|124730675|gb|EH822077.1|EH822077
EST:     AACATCTAGACATATCCAACAACAACATTTCAAGTCTTCCTCCAGAACTG                         GGTTTGCTTTGAGCCTACACTTGAGGTTCTACGACTTGACGGGAACCCATT
genomic: AACATCTAGACATATCCAACAACAACATTTCAAGTCTTCCTCCAGAACTGgtaagtctct ... tgttccttagGGTTTGCTT-GAGCCTACACTTGAGGTTCTACGACTTGACGGGAACCCATT