Sequence
atgc intronic sequence ATGC exonic sequenceATGTCTGCAGCGGCTTTTGCTAAAGGCCTGCTTGACCTAGAAGGACAGCTGACGCCAATCCTGgtttgtccttttctctcatgagaactcttggtggttggtaaggtcatatggtcactaatttcttttcttttttttctctag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G01310.2 |
intron # | 20 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G01310.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA13G05060.1 (Glycine max), 5'ss of exon 21
ATGTCTGCAGCGGCTTTTGCTAAAGGCCTGCTTGACCTAGAAGGACAGCTGACGCCAATCCTGgtttgt--ccttttctctcatgagaactcttggtggttggtaaggtcatatggtcactaatttcttttcttttttttctctag-
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ATGTCTGCAGCTGCTTTTGCCAAAGGTCTTCTTGACCTAGAGGGGCAGCTAACTCCAATCCTGgtttgtggtctttcccctgaaaaaaatatttggtctgtttttttatcgaata-tgtttgactgatttggttatcttttttgaag
upper sequence: AT3G01310.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA18G49000.1 (Glycine max), 5'ss of exon 19
ATGTCTGCAGCGGCTTTTGCTAAAGGCCTGCTTGACCTAGAAGGACAGCTGACGCCAATCCTGgtttgtcctt-----ttctctcatgagaactcttggt-ggttggtaaggtc--atatggtc-actaatttcttttcttttttttctctag
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ATGTCTGCAGCTGCTTTTGCCAAAGGTCTTCTTGACCTTGAAGGGCAGCTCACACCAATCCTGgttggtttttaaattttttctaaagaaagtatttaatcagttttttgtgttggatatatttgactaaaagaattgtaatgttag------
upper sequence: AT3G01310.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA09G37610.1 (Glycine max), 5'ss of exon 17
ATGTCTGCAGCGGCTTTTGCTAAAGGCCTGCTTGACCTAGAAGGACAGCTGACGCCAATCCTGgtttgtcctt-----ttctctcatgagaactcttggtg-gttggtaaggtcatatggtcactaatttcttttcttttttttctctag
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ATGTCTGCAGCCGCTTTTGCCAAAGGTCTTCTTGACCTTGAAGGGCAGCTAACACCAATCCTGgttggtttttaaaatctttctaaagggagtatttaatctgttttttgtgttggata-tctttgactaatataattttaatgttag--
upper sequence: AT3G01310.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA19G02260.1 (Glycine max), 5'ss of exon 17
ATGTCTGCAGCGGCTTTTGCTAAAGGCCTGCTTGACCTAGAAGGACAGCTGACGCCAATCCTGgtttgtcct-tttctctcatgagaactcttggtggttggtaaggtcatatggtcactaatttcttttcttttttttctctag-
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ATGTCTGCAGCTGCTTTTGCCAAAGGTCTTCTTGACCTAGAGGGGCAGCTAACTCCGATCCTGgtttgtggtctttcccccgaaaaaaatatt--cgatctgtttttttattggatgcttgactgatttggttaacttttttgaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124756146|gb|EH846276.1|EH846276EST: GGCCTGCTTGACCTAGAAGGACAGCTGACGCCAATCCTG GTTTCTTTGGTTAGCAAGGACTCTTCCATGTTGGATGGTCTTGATAATGCC
genomic: GGCCTGCTTGACCTAGAAGGACAGCTGACGCCAATCCTGgtttgtcctt ... ttttctctagGTTTCTTTGGTTAGCAAGGACTCTTCCATGTTGGATGGTCTTGATAATGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGTCTGCAGCGGCTTTTGCTAAAGGCCTGCTTGACCTAGAAGGACAGCTGACGCCAATCCTGgtttgtccttttctctcatgagaactcttggtggttggtaaggtcatatggtcactaatttcttttcttttttttctctag
- - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - AGCTGA