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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTACTTAATTGCCTTGATAGCCCTGAACTCCCATTTCTTCAGTGGCAAGAGTGCTTTGCAGTTCTGGCGACACGACTACCTAAAAATCTCAGGAACATGgtaaacacctgtgtagtattcataatccggtttcttatatattgatatttgttttgagttcaagacttttaatcatatctaaataaaactctttatcag

Basic information

species Arabidopsis thaliana
transcript AT1G36160.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 20
CTTACTTAATTGCCTTGATAGCCCTGAACTCCCATTTCTTCAGTGGCAAGAGTGCTTTGCAGTTCTGGCGACACGACTACCTAAAAATCTCAGGAACATGgtaaacacctgtgtagtattcataatccggtttcttatatattgatatttgttttgagttcaagacttttaatcatatctaaataaaactctttatcag
 || ||||||||||||||||| |||||| | || || ||||| |||||||||||||| ||||||||||| || || || || ||| |||| |  ||   ||||||       | | ||  |     ||   || || | | | | |   |  ||| |    ||   | | |        | ||  |     ||| ||||
TTTGCTTAATTGCCTTGATAGTCCTGAATTACCTTTCCTTCAATGGCAAGAGTGCTTGGCAGTTCTGGCAACCCGTCTTCCCAAAGATCTAAAAAATGAGgtaaa-------ggaataccctg---ccacctttttttctctggtttaatactttaaaagtaa---tctgagctggtgttgaactatgtggtttttcag

upper sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 20
CTTACTTAATTGCCTTGATAGCCCTGAACTCCCATTTCTTCAGTGGCAAGAGTGCTTTGCAGTTCTGGCGACACGACTACCTAAAAATCTCAGGAACATGgtaaacacctgtgtagtattcataatccggtttcttatatattgatatttgttttgagttcaagacttttaatcatatctaaataaaactctttatcag
 || ||||||||||||||||| |||||| | || || ||||| |||||||||||||| |||||||| || || || || || ||| | || |  ||   ||||||    |              | |   |||  | |   || |||| |  |   |||     | | | |        | ||  |     ||| ||||
TTTGCTTAATTGCCTTGATAGTCCTGAATTGCCTTTCCTTCAATGGCAAGAGTGCTTGGCAGTTCTTGCAACCCGTCTTCCCAAAGAGCTAAAAAATGAGgtaaagggatac------cctgccacctttttttctctggtttaatatct--taaaagt-----aatctgagctggtgttgaactatgtggtttttcag

upper sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 21
CTTACTTAATTGCCTTGATAGCCCTGAACTCCCATTTCTTCAGTGGCAAGAGTGCTTTGCAGTTCTGGCGACACGACTACCTAAAAATCTCAGGAACATGgtaaacacctg--tgtagtattcataatccggttt---cttatatattg----atatttgttttgagttcaagacttttaatcatatctaaataaaactctttatcag
|||  | | ||| |||||||| ||||||||||| || |||||||||||||||||||| || ||| |||| || || || || ||| ||||| | ||    |||||   ||   | |||  ||| |   |   |||   |||  | | ||    |||||  | ||  | || |   ||  | | || |||   |||  || ||| ||||
CTTGTTGAGTTGTCTTGATAGTCCTGAACTCCCTTTCCTTCAGTGGCAAGAGTGCTTGGCTGTTTTGGCAACCCGCCTTCCCAAAGATCTCCGAAATGAAgtaaatgtctacttttagctttcctctccaaatttacacttgaacaatggtttatattcatgttctgatctaagtttgcattgat-tctg--taattcttttt-tcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116398419|gb|EG441011.1|EG441011
EST:     CGACTACCTAAAAATCTCAGGAACATG                         CTAGAATCAAAGTATAGGGAATTTGAGAGTATTTCCAGAAACTCTTTGACC
genomic: CGACTACCTAAAAATCTCAGGAACATGgtaaacacct ... tctttatcagCTAGAATCAAAGTATAGGGAATTTGAGAGTATTTCCAGAAACTCTTTGACC