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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCAGAGGGTTTCTATGGCTAGGGCCGTTTACTCAAATTCAGACGTGTGCATCTTAGATGACCCATTGAGTGCCCTTGATGCGCATGTTGGTCAGCAGgtaaactagccataggctcttttggatagaacaatactttgtttttctttcaattttgcaaatcgtgaactctataacgttttgtttttcaatctgcatggatattctacttcttgtttgccacggatctctgccatatactacttttaagcaaacattgttatctgatgttcgaaactggctgttatatatag

Basic information

species Arabidopsis thaliana
transcript AT1G30400.1
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30400.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA13G29180.1 (Glycine max), 5'ss of exon 19
AAAGCAGAGGGTTTCTATGGCTAGGGCCGTTTACTCAAATTCAGACGTGTGCATCTTAGATGACCCATTGAGTGCCCTTGATGCGCATGTTGGTCAGCAGgtaaactagccataggctcttttggatagaacaatactttgtttttctttcaattttgcaaatcgtgaactctataacgttttgtttttcaatctgcatggatattctacttcttgtttgccacggatctctgccatatactacttttaagcaaacattgttatctgatgttcgaaactggctgttatatatag
||||||||| || || |||||||| || || ||||||||||| || |||| |||||| ||||||||  | ||||| || ||||| ||||| | |   ||||| | ||          |   |    || |  |||    |  | || |||| |||     | |  | ||    | |    ||| |  |    | |  || |                                                                                             
AAAGCAGAGAGTATCCATGGCTAGAGCTGTCTACTCAAATTCTGATGTGTACATCTTTGATGACCCCCTAAGTGCTCTGGATGCACATGTGGCTAGACAGgttaccttcatgccaattgactcctctatag-aatggcctactgttgtttctattgcttcagtgttcaaactca-agtaatttatgctatggtattgattgt--------------------------------------------------------------------------------------------

upper sequence: AT1G30400.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 19
AAAGCAGAGGGTTTCTATGGCTAGGGCCGTTTACTCAAATTCAGACGTGTGCATCTTAGATGACCCATTGAGTGCCCTTGATGCGCATGTTGGTCAGCAGgtaaactagccataggctcttttggatagaacaatactttgtttttctttcaattttgcaaatcgtgaactctataacgttttgtttttcaatctgcatggatattctacttcttgtttgccacggatctctgccatatactacttttaagcaaacattgttatctgatgttcgaaactggctgttatatatag
||||||  | ||||| ||||||||||| || || || |||||||| |||| ||| || |||||||| || ||||| || ||||| ||||| ||||  |||||||             | |||    |  || |||  |   ||  |     |    ||  | || | |    |   || || || |||  | ||   |||  |  | ||  || |                                                                               
AAAGCAACGAGTTTCCATGGCTAGGGCAGTATATTCCAATTCAGATGTGTACATATTTGATGACCCTTTAAGTGCTCTAGATGCTCATGTGGGTCGACAGgtaa------------ttatttcatgttaaataatgttaaattacttgaggatcgctgtta-tcattattgtttctacattctgctttatactcgatatgatt--tgtagatcat-------------------------------------------------------------------------------