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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTTGATTTTGTGAGAGAAGGATTCTTGGGAAGTAGCCCTGAGTTTAGAAACCGgcaagtctttcataccagtttttttttttttatctgtctattatgatgttatgtttctagagttttaactgtggttctccatacctgcag

Basic information

species Arabidopsis thaliana
transcript AT1G08600.4
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08600.1 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: Vv14s0036g01460.t01 (Vitis vinifera), 5'ss of exon 17
ATGGTTGATTTTGTGAGAGAAGGATTCTTGGGAAGTAGCCCTGAGTTTAGAAACCGgcaagtctttcataccagtttttttttttttatctgtctattatgatgttatgtttctagagttttaactgtggttctccatacctgcag
|||||||||||||| |||||||||||| | |||||||||| ||| ||  |||||||| ||| |||    |    | || || |  ||| |||| |    |  | ||   || |  |  | || |   || ||  |  | | |||||
ATGGTTGATTTTGTAAGAGAAGGATTCCTTGGAAGTAGCCATGAATTCCGAAACCGgtaagacttcttcaatgctattattctaatta-ctgtattcccttttctttacttccatgtctcttgatcatgctttcctttccatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125187681|gb|EL202635.1|EL202635
EST:     GATTTTGTGAGAGAAGGATTCTTGGGAAGTAGCCCTGAGTTTAGAAACCG                         CTTCCAAAATCCAATAGAAAACGGACAGCATATGAATTCAACTGCGGAGGA
genomic: GATTTTGTGAGAGAAGGATTCTTGGGAAGTAGCCCTGAGTTTAGAAACCGgcaagtcttt ... atacctgcagCTTCCAAAATCCAATAGAAAACGGACAGCATATGAATTCAACTGCGGAGGA