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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAATTACCGACATCGGAAATTGCAAACACGATTAACGAGTTCAGAACCCGTCACTTGTCTGAACTGACCGAGgtgtgtttcattgtcgatatatccatctatatttatcagaatctggtttggtctgattgatgtgtattgggaaatggtgtaatgataatggcag

Basic information

species Arabidopsis thaliana
transcript AT1G01790.1
intron # 20
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124776076|gb|EH866203.1|EH866203
EST:     GATTAACGAGTTCAGAACCCGTCACTTGTCTGAACTGACCGAG                         CTATGTGAAGCAAGCGGAAGCTCTCTAGGCTATGGGTACTCTAGGACGAGT
genomic: GATTAACGAGTTCAGAACCCGTCACTTGTCTGAACTGACCGAGgtgtgtttca ... ataatggcagCTATGTGAAGCAAGCGGAAGCTCTCTAGGCTATGGGTACTCTAGGACGAGT
EST: gi|125290757|gb|EL304842.1|EL304842
EST:     CAAACACGATTAACGAGTTCAGAACCCGTCACTTGTCTGAACTGACCGAG                         CTATGTGAAGCA
genomic: CAAACACGATTAACGAGTTCAGAACCCGTCACTTGTCTGAACTGACCGAGgtgtgtttca ... ataatggcagCTATGTGAAGCA
EST: gi|86083727|gb|DR379486.1|DR379486
EST:     CAAACACGATTAACGAGTTCAGAACCCGTCACTTGTCTGAACTGACCGAG                         CTATGTGAAGCAAGCGGAAGCTCTCTAGGCTATGGGTACTCGAGGACGAGT
genomic: CAAACACGATTAACGAGTTCAGAACCCGTCACTTGTCTGAACTGACCGAGgtgtgtttca ... ataatggcagCTATGTGAAGCAAGCGGAAGCTCTCTAGGCTATGGGTACTCTAGGACGAGT