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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGATGGAGGAAGGTCTAGGAAATGTGCATGTTGCCTTGAGGTATCTTCACAAAGCTCTCAAGTGTAATCAAAGGTTGCTTGGTCCGGACCATATCCAGgttcttttcccgatgctcgttttttgttttgggaacataaatatgtaagaaacttgatttgattttgctaattatgtcaaatttcag

Basic information

species Arabidopsis thaliana
transcript AT1G01320.2
intron # 20
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01320.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 20
CATGATGGAGGAAGGTCTAGGAAATGTGCATGTTGCCTTGAGGTATCTTCACAAAGCTCTCAAGTGTAATCAAAGGTTGCTTGGTCCGGACCATATCCAGgttcttttcccgatgctcgttttttgttttgggaacataaatatgtaagaaacttgatttgat--tttgctaattatgtcaaatttcag-----------------
 |||||||| |||||||| |||||||| ||||||||  |  | ||||||||||||||| | ||||| || ||||| || |||||| | || ||||| |||||| | ||    || |   ||| |  |||||  ||    | |||| |      || || ||||  |||    |  ||||   || | |                  
TATGATGGAAGAAGGTCTGGGAAATGTACATGTTGCTCTCCGATATCTTCACAAAGCTTTAAAGTGCAACCAAAGATTACTTGGTGCAGATCATATTCAGgttttatttt--attcatttttctgattttgacaa----attatgaagtttgttttatatgattctttatgcaaaatgttgtatataaattttcttttgaacattt

upper sequence: AT1G01320.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: GLYMA16G02770.1 (Glycine max), 5'ss of exon 20
CATGATGGAGGAAGGTCTAGGAAATGTGCATGTTGCCTTGAGGTATCTTCACAAAGCTCTCAAGTGTAATCAAAGGTTGCTTGGTCCGGACCATATCCAGgttcttttcccgatgctcgttttttgttttgggaacataaatatgtaagaaacttgatttga--ttttgctaattatgtcaaatttcag-----------
 |||||||| |||||||| |||||||| ||||||||  |  | ||||||||||||||| | ||||| || ||||| || |||||| | || ||||| |||||| | ||        |  |||  | ||     |  || ||  | || ||  ||| ||   |  | |||   || |  ||   ||| |            
TATGATGGAAGAAGGTCTGGGAAATGTACATGTTGCTCTCCGATATCTTCACAAAGCTTTAAAGTGCAACCAAAGATTACTTGGTGCAGATCATATTCAGgttttattttattcatttttttgattttgccaaattatgaagttatatgattctttatgcaaaatgttgtacataaattctcttttgaatgattgttaac

upper sequence: AT1G01320.2 (Arabidopsis thaliana), 5'ss of exon 20
lower sequence: Vv15s0046g00740.t01 (Vitis vinifera), 5'ss of exon 20
CATGATGGAGGAAGGTCTAGGAAATGTGCATGTTGCCTTGAGGTATCTTCACAAAGCTCTCAAGTGTAATCAAAGGTTGCTTGGTCCGGACCATATCCAGgttcttttc--------ccgatgctcgttttttgttttgggaacataaatatgtaagaaacttgatttgattttgctaattatgtcaaatttcag------
 |||||||||||||| || ||| |||||||||| ||| | || |||||||| |||||||| ||||| || |||| ||| |||||||| || ||||| ||||||| |  |        |   | |  || |||| ||||       ||  | | |   |    | || |  | ||   | ||||     ||  | |      
TATGATGGAGGAAGGCCTTGGACATGTGCATGTGGCCCTCAGATATCTTCATAAAGCTCTAAAGTGCAACCAAAAGTTACTTGGTCCAGATCATATTCAGgttcctccctattttagcttcttcctgtcttttatttttttg-tttattttttttccatttataatatagtcttttgatttatagttgatgacggaatgaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116396583|gb|EG439175.1|EG439175
EST:     ACAAAGCTCTCAAGTGTAATCAAAGGTTGCTTGGTCCGGACCATATCCAG                         ACTGCTGCAAGCTACCATGCCATAGCAATTGCGCTCTCCTTGATGGAGGCA
genomic: ACAAAGCTCTCAAGTGTAATCAAAGGTTGCTTGGTCCGGACCATATCCAGgttcttttcc ... caaatttcagACTGCTGCAAGCTACCATGCCATAGCAATTGCGCTCTCCTTGATGGAGGCA