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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATGAAAATGTTCAAAGGGAGATCATTAACCACAGGTCACTAAGGCATCCTAATATTGTCAGATTTAAAGAGgtaaaatttatacacttttcttcagtacttgtctttttggaatttgttaagccagtgactcttttaaactctgtttcttgtacttgaggatag

Basic information

species Arabidopsis thaliana
transcript AT5G66880.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66880.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA17G20610.4 (Glycine max), 5'ss of exon 2
ATTGATGAAAATGTTCAAAGGGAGATCATTAACCACAGGTCACTAAGGCATCCTAATATTGTCAGATTTAAAGAGg-----taaaatttatacacttttcttcagtacttgtctttttggaatttgttaagccagtgac-----tcttttaaactctgtttcttgtacttgaggatag
||||||||||||||  | ||||| |||||||| |||||||| || ||||||||||| ||||| |||||||||||||     ||   |||  | |  ||| || | ||   |  ||     |   | ||  ||   |||      | |||  |    |       | | |||   |   
ATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAGgttggttatgtttttcaaatatttatttaatatacggtttgcgacagagtttttggcgcatgatcaaggtatttggagtgttcacgaccgcaattgttaa---

upper sequence: AT5G66880.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G06250.1 (Glycine max), 5'ss of exon 2
ATTGATGAAAATGTTCAAAGGGAGATCATTAACCACAGGTCACTAAGGCATCCTAATATTGTCAGATTTAAAGAGgtaaaatttatacacttttcttca-gtacttgtctttttggaatttgttaagccagtgactcttttaaactctgtttcttgtacttgaggatag
||||||||||||||| |||| || |||||||| |||||||| ||||| |||||||| ||| |||| ||||| |||||      ||||   || | || |  || || | | ||  ||    | |     | |     |     |   ||||  ||| | ||      ||
ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATCCTAACATTATCAGGTTTAAGGAGgttgg---tatatttttatatttatatatttttatgttcaga----ggtggaataatcgtattcagggaaaatgttctttgaaatttcactcag

upper sequence: AT5G66880.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA01G39020.2 (Glycine max), 5'ss of exon 2
ATTGATGAAAATGTTCAAAGGGAGATCATTAACCACAGGTCACTAAGGCATCCTAATATTGTCAGATTTAAAGAGgtaaaatttatacacttttcttca-gtacttgtctttttggaatttgttaagccagtgactcttttaaactctgtttcttgtacttgaggatag
||||||||||||||| |||| || |||||||| |||||||| ||||| |||||||| ||| |||| ||||| |||||      |||| | || | || |  || || | | ||  ||    | ||    | | |   |  |  |   ||||  |||   ||      ||
ATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATCCTAACATTATCAGGTTTAAGGAGgttgg---tatatatttgtatttatatatttttatgttcaga----ggtacaataatcatattcatggaaaatgttctttgatatttgactcag

upper sequence: AT5G66880.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G09460.1 (Glycine max), 5'ss of exon 2
ATTGATGAAAATGTTCAAAGGGAGATCATTAACCACAGGTCACTAAGGCATCCTAATATTGTCAGATTTAAAGAGgtaaaatttatacactt---ttcttcagtacttgtctttttggaatttgttaagccagtgactcttttaaactctgtttcttgtacttgaggatag-----
||||||||||||||  | ||||| || || || |||||||| || ||||||||||| ||||| || ||||||||||| |  | |||     |    | ||   ||     |  ||||        |      || ||    | ||  | | |    ||| |  ||    |      
ATTGATGAAAATGTGAAGAGGGAAATTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAGgttagttatatttttctagggttttatttaaaaaacggtttgcggccgagttt-ttggtcacaacgtcaaggtttttggagtgtccacgaccgcaattgcc

upper sequence: AT5G66880.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv07s0197g00080.t01 (Vitis vinifera), 5'ss of exon 2
ATTGATGAAAATGTTCAAAGGGAGATCATTAACCACAGGTCACTAAGGCATCCTAATATTGTCAGATTTAAAGAGgtaaaatttatacacttttcttcagtacttgt---------ctttttggaatttgttaagccagtgactcttttaaactctgtttcttgtacttgaggatag
||||||||||||||||||||||| || ||||| || ||||| || ||||| || || ||||| || |||||||||||   ||  ||    | |  || |  | || |          | |||  |   || | | |||   | |||     |  |||  |  | |  || |   || 
ATTGATGAAAATGTTCAAAGGGAAATAATTAATCATAGGTCTCTCAGGCACCCCAACATTGTTAGGTTTAAAGAGgtttgatc-atttcttatcttttataatttataaaatgctattctttccagcatggtga-ccacccattctgactgatgctgggtgctatttttcaaattaa