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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACCTAAGAACCCTTACACTGGTCGCTGCCTTTTGAACACCAAGATCACCGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatcccttaattagggggcttttgattgtattttttagaggcatttttcgagggagagatttgattaggttggttgatgacttaggtgag

Basic information

species Arabidopsis thaliana
transcript AT5G66190.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os06g01850.1 (Oryza sativa), 5'ss of exon 1
AAACCTAAGAACCCTTACACTGGTCGCTGCCTTTTGAACACCAAGATCACCGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatcccttaattagggggcttttgattgtatttt--ttagaggcatttttcgagggagagatttgattaggttggttgatgacttaggtgag
|  || ||| | || |||   ||    |||||  | ||||||||||||||||  || ||||| ||||| ||||| |||||||| ||||||| |||||| |||   |  || |         || |  | |  | |    |   |  || |  | ||          |  | ||| | |  |              
AGGCCCAAGGAGCCCTACGTCGGCAAGTGCCTCCTCAACACCAAGATCACCGCCGACGACGCGCCCGGCGAGACATGGCACATGGTCTTCAGCACCGAGGgtctgtaactcatcatccatcctatccaatccaatccaatccaatccaatccttgattactca--ctactcaggattgcag--------------

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G168143_T01 (Zea mays), 5'ss of exon 1
AAACCTAAGAACCCTTACACTGGTCGCTGCCTTTTGAACACCAAGATCACCGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatcccttaatt--agggggcttttgattgtattttttagaggcattt-ttcgagggagagatttgattaggttggttgatgacttaggtgag--------------------
|| || ||| | || |||   ||  | |||||  | ||||||||||||||||| || ||||| || || ||||| |||||||| ||||||| |||||||||||  | |     ||  |       | ||||| |   |        | ||  ||| |  |    ||| |  | |  ||  | |   || | |   |                    
AAGCCCAAGGAGCCGTACGTCGGCAGGTGCCTCCTCAACACCAAGATCACCGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtaggtactgaggttcaaaaaaaaatctgatttttgctgcctcgttcgttcgttcaactgctgtattcgtatcgtatgtataaacgctgatggacgcacgtatgcaccgcacgcag

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G059191_T01 (Zea mays), 5'ss of exon 1
AAACCTAAGAACCCTTACACTGGTCGCTGCCTTTTGAACACCAAGATCACCGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccctta-attagggggcttttgattg-tattttttagaggcatttttcgagggagagatttgattaggttggttgatgacttaggtgag
|| || ||| | || |||   ||  | ||||| |  ||||||| ||||||||| || ||||| || || ||||| |||||||| ||||||| |||||||||||  | |  |   |  | | || |     ||   |    |  |     |     | | | ||  |  |    |  |                  
AAGCCCAAGGAGCCGTACGTCGGGAGGTGCCTGTCCAACACCAGGATCACCGGCGACGACGCGCCGGGGGAGACGTGGCACATGGTCTTCAGCACCGAAGgtacgtgcagtgtgtgtgtgtgcatgcagctggcgtcacctgcactagctagctaaagcaaagcataaagcgtgcag------------------

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G05350.1 (Glycine max), 5'ss of exon 2
AAACCTAAGAACCCTTACACTGGTCGCTGCCTTTTGAACACCAAGATCACCGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatcccttaattagggggcttttgattgtattttttagag---gcatttttcgagggagagatttgatt---aggttggttgatgacttaggtgag--------------------------------
||||| |||| |||||||| |||| | |||||  | ||||| |||||||| || ||||| ||||| || || ||||||||||| ||||||| |||||| |||      || | |       | | |  ||   |||||| |       ||||| | |         | || |   | || | ||| |||   |  |                                   
AAACCCAAGACCCCTTACATTGGTAGATGCCTGCTCAACACAAAGATCACTGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgtcggatgctcattcgttttccctctattttcctttttttgttcttttattttcctataccctccatagactgtaaagtagattgctgataaaatttgtgtttttgagcaaatttagtgttattattgcag

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G23710.1 (Glycine max), 5'ss of exon 2
AAACCTAAGAACCCTTACACTGGTCGCTGCCTTTTGAACACCAAGATCACCGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatcccttaattagggggcttttgattgtattt---tttagaggcatttttcgagggagagatttgattaggttggttgatgacttaggtgag------------------------------
||||| |||| |||||||  |||| | |||||  | ||||| |||||||| || ||||| ||||| || || ||||||||||| ||||||| |||||| |||      || | |       | | |  ||   |||   ||      | ||   |     ||||  |  | ||| |||  |||| |  |  |||                                
AAACCCAAGACCCCTTACGTTGGTAGATGCCTGCTCAACACAAAGATCACTGGGGATGATGCTCCAGGAGAAACTTGGCACATGGTCTTCAGCACCGAGGgttggatgctcattcgttttccctctattttcctttcctttcttttactttaccccccatagagcgtaaagtagattg-ctgataaaatttgtgtttttgagctaaaattagtgttattattgcag

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv04s0023g03510.t01 (Vitis vinifera), 5'ss of exon 2
AAACCTAAGAACCCTTACACTGGTCGCTGCCTTTTGAACACCAAGATCACCGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatcccttaattagggggcttttgattgtatt-----ttt--tagaggcattttt-----cgagggagagatttgattaggttggttgatgacttaggtgag---------------------------------------
|| |||||||| ||||||| |||  | || ||| | ||||| ||||||||||| ||||| ||||| || || || |||||||| ||||||| |||||| |||||   ||||    | |   | | |   | ||||     ||    |||  ||| |||        | |  |  ||||| |   || | ||||  ||   |                                           
AAGCCTAAGAATCCTTACATTGGCAGATGTCTTCTCAACACTAAGATCACCGGGGATGATGCTCCTGGAGAAACATGGCACATGGTCTTCAGCACCGAGGgtaacgaccttttacatgctccatgtatatatattggaaattcaacagaaccatctttaattttatgtggaacttttgagttttttagctgatcgctcctgatttcttttgagctgaatttgattggtcaattgggttgctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86051155|gb|DR346910.1|DR346910
EST:     CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG                         GTGAGGTTCCGTATAGAGAAGGACAATCGATAGGAGTGATTCCAGAGGGAA
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgagGT----T-CCGTATAGAGAAGGACAATCGATAGGAGTGATTCCAGAGGGAA
EST: gi|86051159|gb|DR346914.1|DR346914
EST:     CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG                         T
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: gi|86051159|gb|DR346914.1|DR346914
EST:     CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG                         T
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: gi|86051159|gb|DR346914.1|DR346914
EST:     CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG                         T
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: gi|86051164|gb|DR346919.1|DR346919
EST:     CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG                         T
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: gi|86051164|gb|DR346919.1|DR346919
EST:     CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG                         T
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: gi|86051164|gb|DR346919.1|DR346919
EST:     CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG                         T
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: gi|86051165|gb|DR346920.1|DR346920
EST:     CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG                         W
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: gi|86051165|gb|DR346920.1|DR346920
EST:     CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG                         W
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: gi|86051157|gb|DR346912.1|DR346912
EST:     CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG                         K
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: gi|86051157|gb|DR346912.1|DR346912
EST:     CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG                         K
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: gi|86051157|gb|DR346912.1|DR346912
EST:     CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG                         K
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: gi|86051162|gb|DR346917.1|DR346917
EST:     CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG                         GTGAGGTTCCGTATAGAGAAGGACAATCGATAGGAGTGATTCCAGAGGGAA
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgagGT----T-CCGTATAGAGAAGGACAATCGATAGGAGTGATTCCAGAGGGAA
EST: gi|86051160|gb|DR346915.1|DR346915
EST:     CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGGTGAG                     
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCG-A----AGgtaaatccct ... cttagg
EST: gi|86051158|gb|DR346913.1|DR346913
EST:     GGTGAGACTTGGCACATTGTCTTCACCACCGAAGGTGAG                     
genomic: GGTGAGACTTGGCACATTGTCTTCACCACCG-A----AGgtaaatccct ... cttagg
EST: gi|86078472|gb|DR374229.1|DR374229
EST:     CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGGTGAG                     
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCG-A----AGgtaaatccct ... cttagg
EST: gi|86051156|gb|DR346911.1|DR346911
EST:     CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG                         W
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: gi|86051156|gb|DR346911.1|DR346911
EST:     CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG                         W
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgag-
EST: gi|86051163|gb|DR346918.1|DR346918
EST:     CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAG                         GTGAGGTTCCGTATAGAGAAGGACAATCGATAGGAGTGATTCCAGAGGGAA
genomic: CGGTGATGACGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGgtaaatccct ... cttaggtgagGT----T-CCGTATAGAGAAGGACAATCGATAGGAGTGATTCCAGAGGGAA