Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaatatcaatcacctttaattagagatatcaaccagtacatgagttaaagccttgtgatctctactcttag

Basic information

species Arabidopsis thaliana
transcript AT5G66170.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152037864|gb|BP800677.2|BP800677
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GCTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAAC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagG-TAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAAC
EST: gi|86063045|gb|DR358802.1|DR358802
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063027|gb|DR358784.1|DR358784
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063014|gb|DR358771.1|DR358771
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063013|gb|DR358770.1|DR358770
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063033|gb|DR358790.1|DR358790
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063024|gb|DR358781.1|DR358781
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063032|gb|DR358789.1|DR358789
EST:     TGAGGCAGCTAANATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTNTTGGAGCAAGTATNTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063022|gb|DR358779.1|DR358779
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063008|gb|DR358765.1|DR358765
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063036|gb|DR358793.1|DR358793
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGNTCNACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063043|gb|DR358800.1|DR358800
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063034|gb|DR358791.1|DR358791
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063046|gb|DR358803.1|DR358803
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063019|gb|DR358776.1|DR358776
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063041|gb|DR358798.1|DR358798
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063010|gb|DR358767.1|DR358767
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063026|gb|DR358783.1|DR358783
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063042|gb|DR358799.1|DR358799
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063038|gb|DR358795.1|DR358795
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063044|gb|DR358801.1|DR358801
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063020|gb|DR358777.1|DR358777
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86087471|gb|DR383230.1|DR383230
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063025|gb|DR358782.1|DR358782
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063016|gb|DR358773.1|DR358773
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063015|gb|DR358772.1|DR358772
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063040|gb|DR358797.1|DR358797
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063005|gb|DR358762.1|DR358762
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063006|gb|DR358763.1|DR358763
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063048|gb|DR358805.1|DR358805
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063035|gb|DR358792.1|DR358792
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86018801|gb|DR314547.1|DR314547
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCGAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|301502023|gb|HO207563.1|HO207563
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063017|gb|DR358774.1|DR358774
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063031|gb|DR358788.1|DR358788
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063021|gb|DR358778.1|DR358778
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86072845|gb|DR368602.1|DR368602
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|47832061|gb|CK121745.1|CK121745
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063037|gb|DR358794.1|DR358794
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTTCTCTTCTAAAC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTT-CTCTTCTAAAC
EST: gi|86063009|gb|DR358766.1|DR358766
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063018|gb|DR358775.1|DR358775
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063023|gb|DR358780.1|DR358780
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
EST: gi|86063039|gb|DR358796.1|DR358796
EST:     TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAG                         GTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC
genomic: TGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaa ... ctactcttagGTAGAGTGAAGAATCAAGAGTTCTTGGAGCAAGTATCTTCTCTTCTAAACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTCAGGACGAGTTTAGGAGAGGCCATTGTGAGGCAGCTAAGATCGTCAACATTCCCTACATGCTCAACACACCTCAAGgtaaatcaaatatcaatcacctttaattagagatatcaaccagtacatgagttaaagccttgtgatctctactcttag

- - - - - - - - - - - - - - - - - GCAGCT