1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCTCTACCTGGACAAGACTATAGATGCTTTAACCAGAGGAAATCCAAACGTGACAGTGGAAAGTGTAATTTTGCCTGATGGAGAGAAATACAAAGACATGgtacatgttatcttggattttgatttccctgtttataataaagaatcattagtaatcgtgagttattgagactcttttattctttctag
species | Arabidopsis thaliana |
transcript | AT5G66120.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGACAGTGGAAAGTGTAATTTTGCCTGATGGAGAGAAATACAAAGACATG GATACTCTCATGAAAGTCTTCGACAAGGCCATTGAGTCTCGCCTAGATAGAEST: gi|116421947|gb|EG464539.1|EG464539
genomic: TGACAGTGGAAAGTGTAATTTTGCCTGATGGAGAGAAATACAAAGACATGgtacatgtta ... ttctttctagGATACTCTCATGAAAGTCTTCGACAAGGCCATTGAGTCTCGCCTAGATAGA
EST: TGACAGTGGAAAGTGTAATTTTGCCTGATGGAGAGAAATACAAAGACATG GATACTCTCATGAAAGTCTTCGACAAGGCCATTGAGTCTCGCCTAGATAGAEST: gi|116450338|gb|EG492930.1|EG492930
genomic: TGACAGTGGAAAGTGTAATTTTGCCTGATGGAGAGAAATACAAAGACATGgtacatgtta ... ttctttctagGATACTCTCATGAAAGTCTTCGACAAGGCCATTGAGTCTCGCCTAGATAGA
EST: TGACAGTGGAAAGTGTAATTTTGCCTGATGGAGAGAAATACAAAGACATG GATACTCTCATGAAAGTCTTCGACAAGGCCATTGAGTCTCGCCTAGATAGAEST: gi|116421951|gb|EG464543.1|EG464543
genomic: TGACAGTGGAAAGTGTAATTTTGCCTGATGGAGAGAAATACAAAGACATGgtacatgtta ... ttctttctagGATACTCTCATGAAAGTCTTCGACAAGGCCATTGAGTCTCGCCTAGATAGA
EST: TGACAGTGGAAAGTGTAATTTTGCGTGATGGAGAGAAATACAAAGACATG GATACTCTCATGAAAGTCTTCGACAAGGCCATTGAGTCTCGCCTAGATAGAEST: gi|116421921|gb|EG464513.1|EG464513
genomic: TGACAGTGGAAAGTGTAATTTTGCCTGATGGAGAGAAATACAAAGACATGgtacatgtta ... ttctttctagGATACTCTCATGAAAGTCTTCGACAAGGCCATTGAGTCTCGCCTAGATAGA
EST: TGATGGAGAGAAATACAAAGACATG GATACTCTCATGAAAGTCTTCGACAAGGCCATTGAGTCTCGCCTAGATAGAEST: gi|124948081|gb|EL023871.1|EL023871
genomic: TGATGGAGAGAAATACAAAGACATGgtacatgtta ... ttctttctagGATACTCTCATGAAAGTCTTCGACAAGGCCATTGAGTCTCGCCTAGATAGA
EST: AAATACAAAGACATG GATACTCTCATGAAAGTCTTCGACAAGGCCGTTGAGTCTCGCCTAGATAGAEST: gi|116450349|gb|EG492941.1|EG492941
genomic: AAATACAAAGACATGgtacatgtta ... ttctttctagGATACTCTCATGAAAGTCTTCGACAAGGCCATTGAGTCTCGCCTAGATAGA
EST: TGACAGTGGAAAGTGTAATTTTGCCTGATGGAGAGAAATACAAAGACATG GATACTCTCATGAAAGTCTTCGACAAGGCCATTGAGTCTCGCCTAGATAGAEST: gi|116472855|gb|EG515447.1|EG515447
genomic: TGACAGTGGAAAGTGTAATTTTGCCTGATGGAGAGAAATACAAAGACATGgtacatgtta ... ttctttctagGATACTCTCATGAAAGTCTTCGACAAGGCCATTGAGTCTCGCCTAGATAGA
EST: TGACAGTGGAAAGTGTAATTTTGCCTGATGGAGAGAAATACAAAGACATG GATACTCTCATGAAAGTCTTCGACAAGGCCATTGAGTCTCGCCTAGATAGAEST: gi|116421964|gb|EG464556.1|EG464556
genomic: TGACAGTGGAAAGTGTAATTTTGCCTGATGGAGAGAAATACAAAGACATGgtacatgtta ... ttctttctagGATACTCTCATGAAAGTCTTCGACAAGGCCATTGAGTCTCGCCTAGATAGA
EST: TGACAGTGGAAAGTGTAATTTTGCCTGATGGAGAGAAATACAAAGACATG GATACTCTCATGAAAGTCTTCGACAAGGCCATTGAGTCTCGCCTAGATAGA
genomic: TGACAGTGGAAAGTGTAATTTTGCCTGATGGAGAGAAATACAAAGACATGgtacatgtta ... ttctttctagGATACTCTCATGAAAGTCTTCGACAAGGCCATTGAGTCTCGCCTAGATAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCTACCTGGACAAGACTATAGATGCTTTAACCAGAGGAAATCCAAACGTGACAGTGGAAAGTGTAATTTTGCCTGATGGAGAGAAATACAAAGACATGgtacatgttatcttggattttgatttccctgtttataataaagaatcattagtaatcgtgagttattgagactcttttattctttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA