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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTATGGTTTCTCAATTGGTGCAACACGAGCGAATTGAGACCACTGTTACAAAGgtactaattcctattttcctcaattttggtttctctgatctggggtttaagctagggtttataggcatctgttgagaatctaaaaatgttacctacattggattatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G64650.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116397022|gb|EG439614.1|EG439614
EST:     TGGTTTCTCAATTGGTGCAACACGAGCGAATTGAGACCACTGTTACAAAG                         GCTAAAGAAGTTCGTCGTCTTGCTGATAATATGATTCAACTCGGAAAAGAG
genomic: TGGTTTCTCAATTGGTGCAACACGAGCGAATTGAGACCACTGTTACAAAGgtactaattc ... gattatgcagGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGATTCAACTCGGAAAAGAG
EST: gi|116397024|gb|EG439616.1|EG439616
EST:     ATTGGTGCAACACGAGCGAATTGAGACCACTGTTACAAAG                         GCTAAAGAAGTTCGTCGTCTTGCTGATAATATGATTCAACTCGGAAAAGAG
genomic: ATTGGTGCAACACGAGCGAATTGAGACCACTGTTACAAAGgtactaattc ... gattatgcagGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGATTCAACTCGGAAAAGAG