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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGCTGCAACGAAACTCAAGCAAATGGGCCCTGTCACTAAAAACGAATGGATCATGGTCGGTACAATGCTTCTTGCTGTCACTCTTTGGATCTGCGGgtaagtcttagatcactttcatgttttgtatcataccgttgattaaaaaaatctgagtattccatgggtttaatattatatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G64290.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G64290.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G18910.1 (Glycine max), 5'ss of exon 2
GTATTGCTGCAACGAAACTCAAGCAAATGGGCCCTGTCACTAAAAACGAATGGATCATGGTCGGTACAATGCTTCTTGCTGTCACTCTTTGGATCTGCGGgtaagtcttagatcactttcatgttttgtatc-ataccgttgattaaaaaaatct---gagtattccatgggtttaatattatatgcag-----------------
   | ||||| | ||||||  |    |||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||  || | |||||||  ||||| |||||      ||  | | | || |||| | | |  ||  | ||    | |   || |  |   |  ||||  |    | |   |                 
CCCTGGCTGCCAAGAAACTGGAAAGTATGGGCCCTGTCACTAAAAATGAATGGATTATGGTCGGCACAATGCTTCTTGCAGTGTCTTTGTGGATCTTTGGgtatgtctt------ctgccgtctattatatctacatctatggatgaatgtttttttggactgatttctaagtttgttgactttttgggtggagaacttgatcctt

upper sequence: AT5G64290.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA15G06110.1 (Glycine max), 5'ss of exon 2
GTATTGCTGCAACGAAACTCAAGCAAATGGGCCCTGTCACTAAAAACGAATGGATCATGGTCGGTACAATGCTTCTTGCTGTCACTCTTTGGATCTGCGGgtaagtcttagatcactt-tcatgttttgtatcatac-cgttgattaaaaaaatctgagtattccatgggtttaatattatatgcag-------------
   | ||||| | ||||||  |    |||||||||||||||||||| |||||||| ||||| || |||||||||||||| ||  || | |||||||  ||||| |||||        | | || | |      ||    ||  ||  |  |  | |   | ||   |    | | |  ||  |                 
CCCTGGCTGCCAAGAAACTGGAAAGTATGGGCCCTGTCACTAAAAATGAATGGATTATGGTTGGCACAATGCTTCTTGCAGTGTCTTTGTGGATCTTTGGgtatgtcttctgcagtctattatatctacacctatgtatgtctatgcatgactttttttttttttttttactgatttctaagtttgttgattttttgggt

upper sequence: AT5G64290.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA13G02150.1 (Glycine max), 5'ss of exon 9
GTATTGCTGCAACGAAACTCAAGCAAATGGGCCCTGTCACTAAAAACGAATGGATCATGGTCGGTACAATGCTTCTTGCTGTCACTCTTTGGATCTGCGGgtaagtcttagatcactt-tcatgttttgtatcat-----accgttgattaaa--aaaatctgagt------attccatgggtttaatattatatgcag-
   | ||||| | ||||||  |    ||||||| ||||| ||||||||||||||| |||||||| |||||||| ||||| ||  || | |||||||  ||||| |||||    ||  | | || | |  |   ||     |  |||  ||  |   |  ||| |||      | |   |||||  |  | |  || |   
CCCTGGCTGCCAAGAAACTGGAAAGTATGGGCCTTGTCATTAAAAACGAATGGATTATGGTCGGCACAATGCTCCTTGCAGTGTCTTTATGGATCTTTGGgtatgtcttctgccatctattatatctattcctatggatgaatgttttttggactgatttctaagtttgttgactttttgggtggagaacttgatccttg

upper sequence: AT5G64290.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S163_57V6.1 (Physcomitrella patens), 5'ss of exon 2
GTATTGCTGCAACGAAACTCAAGCAAATGGGCCCTGTCACTAAAAACGAATGGATCATGGTCGGTACAATGCTTCTTGCTGTCACTCTTTGGATCTGCGGgtaag--tcttagatcactttcatg---ttttgtatcataccgttg-attaaaaa-aatctgagtattccatgggtttaatattatatgcag-----------------
     || || | ||||||  ||    |||||||||| ||| | |||||||||  |||||| || ||||||||  | ||||||||||||||| |||  ||||| |  |||   |||| | |  |    || | |  ||| |   || | ||   | |||||   | || |   | ||     |   |||                    
CAGCGGCCGCCAAGAAACTAGAGGCGTTGGGCCCTGTTACTCAGAACGAATGGTCCATGGTGGGAACAATGCTCTTGGCTGTCACTCTTTGGGTCTTTGGgtacgcatctaccatcaatcttgttagtttctttcccattcttctgtactacttacaatctacatctttctcagtttctgagtctcatgtgatcactttctacttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124983396|gb|EL056130.1|EL056130
EST:     TTGCTGTCACTCTTTGGATCTGCGG                         AGAGACTCTGGGAATACCAAGTGTTGTAGCTGCCATGATCGGTCTCTCCAT
genomic: TTGCTGTCACTCTTTGGATCTGCGGgtaagtctta ... ttatatgcagAGAGACTCTGGGAATACCAAGTGTTGTAGCTGCCATGATCGGTCTCTCCAT