1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGATGTGAAAGAGCAAGGAAACCTCACCAACGAGGCAGAGAAGTCAATGCCATCATCACAGCAGGAGgtttccttttaattctcacactagatgttgatcaaataccgtaatgaatacaatatcgtgacctaactctttctttaattgcattgtgtag
species | Arabidopsis thaliana |
transcript | AT5G64130.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAAACCTCACCAACGAGGCAGAGAAGTCAATGCCATCATCACAGCAGGAG GAGGCTGTTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTEST: gi|152038486|gb|AV824182.2|AV824182
genomic: GAAACCTCACCAACGAGGCAGAGAAGTCAATGCCATCATCACAGCAGGAGgtttcctttt ... cattgtgtagGAGGCTGTTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCT
EST: GAAACCTCACCAACGAGGCAGAGAAGTCAATGCCATCATCACAGCAGGAG GAGGCTGTTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTEST: gi|152034695|gb|BP834900.2|BP834900
genomic: GAAACCTCACCAACGAGGCAGAGAAGTCAATGCCATCATCACAGCAGGAGgtttcctttt ... cattgtgtagGAGGCTGTTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCT
EST: AAACCTCACCAACGAGGCAGAGAAGTCAATGGCCATCATCACAGCAGGAG GAGGGCTGTTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCEST: gi|86059149|gb|DR354906.1|DR354906
genomic: AAACCTCACCAACGAGGCAGAGAAGTCAATG-CCATCATCACAGCAGGAGgtttcctttt ... cattgtgtagGAGG-CTGTTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACC
EST: GAAACCTCACCAAC--GGCAGAGAAGTCAATGCCATCATCACAGCAGGAG GAGGCTGTTGTAAAGAAGAAGTATGGATGGCTCATGCCAAAGAAACCACCTEST: gi|164002627|gb|EL967848.1|EL967848
genomic: GAAACCTCACCAACGAGGCAGAGAAGTCAATGCCATCATCACAGCAGGAGgtttcctttt ... cattgtgtagGAGGCTGTTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCT
EST: GAAACCTCACCAACGAGGCAGATAAGTCAATGCCATCATCACAGCAGGAG GAGGCTGTTGTAAAGAAGAAGTATGEST: gi|86059148|gb|DR354905.1|DR354905
genomic: GAAACCTCACCAACGAGGCAGAGAAGTCAATGCCATCATCACAGCAGGAGgtttcctttt ... cattgtgtagGAGGCTGTTGTAAAGAAGAAGTATG
EST: GAAACCTCACCAACGAGGCAGAGAAGTCAATGCCATCATCACAGCAGGAG GAGGCTGTTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTEST: gi|164124322|gb|EL999452.1|EL999452
genomic: GAAACCTCACCAACGAGGCAGAGAAGTCAATGCCATCATCACAGCAGGAGgtttcctttt ... cattgtgtagGAGGCTGTTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCT
EST: TCACAGCAGGAG GAGGCTGTTGTAAAGAAGAAGTATGGAGGGGCTCATGCCAAAGAAACCACCEST: gi|86075858|gb|DR371615.1|DR371615
genomic: TCACAGCAGGAGgtttcctttt ... cattgtgtagGAGGCTGTTGTAAAGAAGAAGTATGGA-GGGCTCATGCCAAAGAAACCACC
EST: GAAACCTCACCAACGAGGCAGAGAAGTCAATGCCATCATCACAGCAGGAG GAGGCTGTTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTEST: gi|86059150|gb|DR354907.1|DR354907
genomic: GAAACCTCACCAACGAGGCAGAGAAGTCAATGCCATCATCACAGCAGGAGgtttcctttt ... cattgtgtagGAGGCTGTTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCT
EST: GAAACCTCACCAACGAGGCAGAGAAGTCAATGCCATCATCACAGCAGGAG GAGGCTGTTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCTEST: gi|124860961|gb|EH945398.1|EH945398
genomic: GAAACCTCACCAACGAGGCAGAGAAGTCAATGCCATCATCACAGCAGGAGgtttcctttt ... cattgtgtagGAGGCTGTTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAAACCACCT
EST: AAACCTCACCAACGAGGCAGAGAAGTCAATGCCATACATCACAGCAGGAG GAGGCTGTTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAA
genomic: AAACCTCACCAACGAGGCAGAGAAGTCAATGCCAT-CATCACAGCAGGAGgtttcctttt ... cattgtgtagGAGGCTGTTGTAAAGAAGAAGTATGGAGGGCTCATGCCAAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGCGTTGAGACATCATCATGTCTAGCGCAGAGGATGTGAAAGAGCAAGGAAACCTCACCAACGAGGCAGAGAAGTCAATGCCATCATCACAGCAGGAGgtttccttttaattctcacactagatgttgatcaaataccgtaatgaatacaatatcgtgacctaactctttctttaattgcattgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT