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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAGTGGAGCAAACTTTGCGAGAGCATTCACTGTTCAATTCGGAAGCTGCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaatatccacaacgttttcttttctttgggaataatatttaacttgaagagattgtgatgttcttgttcgttttctgttttgcagaaag

Basic information

species Arabidopsis thaliana
transcript AT5G64040.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G64040.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA04G39370.5 (Glycine max), 5'ss of exon 2
AACAAGTGGAGCAAACTTTGCGAGAGCATTCACTGTTCAATTCGGAAGCTGCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaatatccacaacgttttcttttctttgggaa----taatattta-acttga-------------agagattgtgatgttcttgttcgttttctgttttgcagaaag---------------------------------
 || | ||||||||||||||| ||||||| ||| ||  ||||||| || ||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |  ||   | |    |  |||   || ||||   ||    |||   ||  |||||              ||  ||| | ||| | |||||| ||||   | ||                                         
TACTACTGGAGCAAACTTTGCAAGAGCATACACCGTGGAATTCGGTAGTTGCAAGTTCCCTGAGAACTTCACTGGTTGCCAAGATCTTGCCAAACAAAAGgtctagctc-cacctctgatatttcacttgctttcccaaatcctaactcttgcacttgcctttttctaattcagtaattctcatgctgttgttcttttttcttcttttttttttctccttttcgtttctgggtttttatctacgcag

upper sequence: AT5G64040.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA04G39370.1 (Glycine max), 5'ss of exon 2
AACAAGTGGAGCAAACTTTGCGAGAGCATTCACTGTTCAATTCGGAAGCTGCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaatatccacaacgttttcttttctttgggaa----taatattta-acttga-------------agagattgtgatgttcttgttcgttttctgttttgcagaaag-------------------------------------
 || | ||||||||||||||| ||||||| ||| ||  ||||||| || ||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |  ||   | |    |  |||   || ||||   ||    |||   ||  |||||              ||  ||| | ||| | |||||| ||||   | ||                                             
TACTACTGGAGCAAACTTTGCAAGAGCATACACCGTGGAATTCGGTAGTTGCAAGTTCCCTGAGAACTTCACTGGTTGCCAAGATCTTGCCAAACAAAAGgtctagctc-cacctctgatatttcacttgctttcccaaatcctaactcttgcacttgcctttttctaattcagtaattctcatgctgttgttcttttttcttcttttttttttctccttttcgtttctgggtttttatctacgcagaaag

upper sequence: AT5G64040.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G15540.1 (Glycine max), 5'ss of exon 2
AACAAGTGGAGCAAACTTTGCGAGAGCATTCACTGTTCAATTCGGAAGCTGCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaatatccacaacgttttcttttctttgggaa----taatatttaacttgaagagattgtgatgttcttgttcgttttc----tgttttgcagaaag-------------------------------
 || | ||||||||||||||| ||||||| ||| ||  ||||||| || ||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |  ||  || |    |  |||   || ||||   ||    |||   ||    |       || | ||    |  ||  || ||    |||| | |     |                               
TACTACTGGAGCAAACTTTGCAAGAGCATACACCGTGGAATTCGGTAGTTGCAAGTTCCCTGAGAACTTCACTGGTTGCCAAGATCTTGCCAAACAAAAGgtctagctc-tacctctgatatttcacttgctttcccaaattctaactcttgctcttgcctttttctaattcagtaattaattctcatgctgttgtacttttgggctggtcgtttctgggattttatttacgcag

upper sequence: AT5G64040.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv04s0044g01410.t01 (Vitis vinifera), 5'ss of exon 2
AACAAGTGGAGCAAACTTTGCGAGAGCATTCACTGTTCAATTCGGAAGCTGCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaatatccacaac--gttttcttttctttgggaataatatttaacttgaagagattgtga-tgttcttgttcgttttctgttttgcagaaag
 ||||| |||||||||||||| ||||||| |||||||||||| |||| |||||||||||||||||| |||||||||||||| ||||| |||||| |||| ||    |  |||  | ||||   | | || |  |||   | |  |||| |   ||| ||   | | | || | || |||  |||   |  |||||    
TACAAGCGGAGCAAACTTTGCCAGAGCATACACTGTTCAATTTGGAACCTGCAAGTTCCCTGAGAACTTCACTGGCTGCCAGGATCTCGCCAAGAAAAAAgtgaaacccatactctcaactaatgtcctctgttttcccagttgtatt-acaatgatgactgtataactgattttcttccgttttgttggtgcag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059390|gb|DR355147.1|DR355147
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059390|gb|DR355147.1|DR355147
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059390|gb|DR355147.1|DR355147
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059390|gb|DR355147.1|DR355147
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059390|gb|DR355147.1|DR355147
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059395|gb|DR355152.1|DR355152
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059395|gb|DR355152.1|DR355152
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059395|gb|DR355152.1|DR355152
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059395|gb|DR355152.1|DR355152
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059395|gb|DR355152.1|DR355152
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059381|gb|DR355138.1|DR355138
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059381|gb|DR355138.1|DR355138
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059381|gb|DR355138.1|DR355138
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059381|gb|DR355138.1|DR355138
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059381|gb|DR355138.1|DR355138
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059399|gb|DR355156.1|DR355156
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGAAAG                      
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGC---A-AAAGgtttgtctaa ... ttgcaga
EST: gi|86059391|gb|DR355148.1|DR355148
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059391|gb|DR355148.1|DR355148
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059391|gb|DR355148.1|DR355148
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059391|gb|DR355148.1|DR355148
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059391|gb|DR355148.1|DR355148
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059368|gb|DR355125.1|DR355125
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059368|gb|DR355125.1|DR355125
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059368|gb|DR355125.1|DR355125
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059368|gb|DR355125.1|DR355125
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059368|gb|DR355125.1|DR355125
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059377|gb|DR355134.1|DR355134
EST:     GCAAGTTCCCTGAGAATCTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059377|gb|DR355134.1|DR355134
EST:     GCAAGTTCCCTGAGAATCTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059377|gb|DR355134.1|DR355134
EST:     GCAAGTTCCCTGAGAATCTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059377|gb|DR355134.1|DR355134
EST:     GCAAGTTCCCTGAGAATCTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059377|gb|DR355134.1|DR355134
EST:     GCAAGTTCCCTGAGAATCTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059404|gb|DR355161.1|DR355161
EST:     GTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAANNNAAG                         TTCCATTTATCTCAGAA--TATTGCTTTGGAATGCGAAGGCAAGGACAAG
genomic: GTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAA---A-Ggtttgtctaa ... ttgcagaaagTTCCATTTATCTCAGAAGATATTGCTTTGGAATGCGAAGGCAAGGACAAG
EST: gi|86059380|gb|DR355137.1|DR355137
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059380|gb|DR355137.1|DR355137
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059380|gb|DR355137.1|DR355137
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059380|gb|DR355137.1|DR355137
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059380|gb|DR355137.1|DR355137
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059397|gb|DR355154.1|DR355154
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059397|gb|DR355154.1|DR355154
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059397|gb|DR355154.1|DR355154
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059397|gb|DR355154.1|DR355154
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059397|gb|DR355154.1|DR355154
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059378|gb|DR355135.1|DR355135
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059378|gb|DR355135.1|DR355135
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059378|gb|DR355135.1|DR355135
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059378|gb|DR355135.1|DR355135
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059378|gb|DR355135.1|DR355135
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|116467443|gb|EG510035.1|EG510035
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|116467443|gb|EG510035.1|EG510035
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|116467443|gb|EG510035.1|EG510035
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|116467443|gb|EG510035.1|EG510035
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|116467443|gb|EG510035.1|EG510035
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059382|gb|DR355139.1|DR355139
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059382|gb|DR355139.1|DR355139
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059382|gb|DR355139.1|DR355139
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059382|gb|DR355139.1|DR355139
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059382|gb|DR355139.1|DR355139
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059384|gb|DR355141.1|DR355141
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059384|gb|DR355141.1|DR355141
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059384|gb|DR355141.1|DR355141
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059384|gb|DR355141.1|DR355141
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059384|gb|DR355141.1|DR355141
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059392|gb|DR355149.1|DR355149
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059392|gb|DR355149.1|DR355149
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059392|gb|DR355149.1|DR355149
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059392|gb|DR355149.1|DR355149
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059392|gb|DR355149.1|DR355149
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059385|gb|DR355142.1|DR355142
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059385|gb|DR355142.1|DR355142
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059385|gb|DR355142.1|DR355142
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059385|gb|DR355142.1|DR355142
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059385|gb|DR355142.1|DR355142
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059369|gb|DR355126.1|DR355126
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059369|gb|DR355126.1|DR355126
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059369|gb|DR355126.1|DR355126
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059369|gb|DR355126.1|DR355126
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059369|gb|DR355126.1|DR355126
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059393|gb|DR355150.1|DR355150
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059393|gb|DR355150.1|DR355150
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059393|gb|DR355150.1|DR355150
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059393|gb|DR355150.1|DR355150
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059393|gb|DR355150.1|DR355150
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059396|gb|DR355153.1|DR355153
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059396|gb|DR355153.1|DR355153
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059396|gb|DR355153.1|DR355153
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059396|gb|DR355153.1|DR355153
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059396|gb|DR355153.1|DR355153
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059373|gb|DR355130.1|DR355130
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059373|gb|DR355130.1|DR355130
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059373|gb|DR355130.1|DR355130
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059373|gb|DR355130.1|DR355130
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059373|gb|DR355130.1|DR355130
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|116438424|gb|EG481016.1|EG481016
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|116438424|gb|EG481016.1|EG481016
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|116438424|gb|EG481016.1|EG481016
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|116438424|gb|EG481016.1|EG481016
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|116438424|gb|EG481016.1|EG481016
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059383|gb|DR355140.1|DR355140
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059383|gb|DR355140.1|DR355140
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059383|gb|DR355140.1|DR355140
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059383|gb|DR355140.1|DR355140
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059383|gb|DR355140.1|DR355140
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059394|gb|DR355151.1|DR355151
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059394|gb|DR355151.1|DR355151
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059394|gb|DR355151.1|DR355151
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059394|gb|DR355151.1|DR355151
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059394|gb|DR355151.1|DR355151
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059364|gb|DR355121.1|DR355121
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059364|gb|DR355121.1|DR355121
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059364|gb|DR355121.1|DR355121
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059364|gb|DR355121.1|DR355121
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-
EST: gi|86059364|gb|DR355121.1|DR355121
EST:     GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAG                         A
genomic: GCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaa ... ttgcagaaag-

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACAAGTGGAGCAAACTTTGCGAGAGCATTCACTGTTCAATTCGGAAGCTGCAAGTTCCCTGAGAATTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGgtttgtctaatatccacaacgttttcttttctttgggaataatatttaacttgaagagattgtgatgttcttgttcgttttctgttttgcagaaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA