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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCAATTTGGACTGGAGATAACACAGCCGAATGGGAACACCTTAGAGTCTCCATTCCAATGATATTGACACTTGGTCTTACTGGAATTACATTCTCTGgtacaaacaaatttagctgttcaaattctgctggcgttttttttttctttctcaaatttaatggaagttttcttttcttttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G63840.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63840.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA04G38630.1 (Glycine max), 5'ss of exon 2
GGAGCAATTTGGACTGGAGATAACACAGCCGAATGGGAACACCTTAGAGTCTCCATTCCAATGATATTGACACTTGGTCTTACTGGAATTACATTCTCTGgtacaaacaaatttagctgttcaaattctgctggcgt-tttttttttctttctcaaatttaatggaagttt-tcttttcttttgcag-------------------------------------------------------------------------
|||||| |||||||||| |||||||| || || ||||| ||||| ||||| || || |||||| | ||||| |||||||||||||| ||  |||||||||||    |      |      |     | |  |      || || |||  ||| || ||| |  |  | |   | |  |  ||||||                                                                          
GGAGCAGTTTGGACTGGGGATAACACTGCTGATTGGGATCACCTAAGAGTTTCTATCCCAATGGTTTTGACCCTTGGTCTTACTGGGATGTCATTCTCTGgtgggtattgtccttctcaatatgtatttattatttcattattcttttcttcgcatattcatagtcaatcaatatacttatttgcacaagttaggcaaactccccctgccctgcccccctttgttcatatgatcttattcttatcttgtacataatgcag

upper sequence: AT5G63840.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G16370.1 (Glycine max), 5'ss of exon 2
GGAGCAATTTGGACTGGAGATAACACAGCCGAATGGGAACACCTTAGAGTCTCCATTCCAATGATATTGACACTTGGTCTTACTGGAATTACATTCTCTGgtacaaacaaatttagctgttcaaattctgctggcgttttttttttctttctcaaatttaatggaagttttcttttcttttgcag
    || | |||||||| |||||||| || || ||||| ||||| ||||| || || |||||| | ||||| |||||||||||||| ||  |||||||||||    |      |   | |  | ||     |    |||  |  ||||||        || |                       
----CAGTATGGACTGGGGATAACACTGCTGATTGGGATCACCTAAGAGTTTCTATCCCAATGGTTTTGACCCTTGGTCTTACTGGGATGCCATTCTCTGGTGGgtattgtcct---tctcaagatgtatttattatttcatcattcttttctttgcatattcag--------------------

upper sequence: AT5G63840.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv16s0039g01030.t01 (Vitis vinifera), 5'ss of exon 2
GGAGCAATTTGGACTGGAGATAACACAGCCGAATGGGAACACCTTAGAGTCTCCATTCCAATGATATTGACACTTGGTCTTACTGGAATTACATTCTCTGgtacaaacaaatttagctgttcaaattctgctggcgttttttttttctttctcaaatttaatggaa-gttttcttttcttttgcag
||||| |||||||| |||||||| ||||| || ||||| || || || || ||  |||| ||||| ||||| ||||| ||||||||||| |||||||||||||   | ||| |||  |  | |||      |||| |||||| ||| |||   | ||    ||  | | ||  |||| | || |||
GGAGCTATTTGGACAGGAGATAATACAGCAGACTGGGATCAACTCAGGGTTTCAGTTCCTATGATTTTGACCCTTGGCCTTACTGGAATGACATTCTCTGgtatgta-aaacttatttaattaaag---aatggcattttttattttttttaaatataggttgtcatggttgattttttattacag

upper sequence: AT5G63840.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv05s0029g01090.t01 (Vitis vinifera), 5'ss of exon 2
GGAGCAATTTGGACTGGAGATAACACAGCCGAATGGGAACACCTTAGAGTCTCCATTCCAATGATATTGACACTTGGTCTTACTGGAATTACATTCTCTGgtacaaacaaatttagctgttcaaattctgctggcgttttttttttctttctcaaatttaatggaagttttcttttcttttgcag
|||||  ||||||| |||||||| ||||| || ||||| || || || || ||  |||| ||||| ||||| ||||| ||||||||||| |||||||||||||   | ||| |||  |  | |||      |||| |||||||||| |   |  |  ||     | | ||  |||| | || |||
GGAGCTGTTTGGACAGGAGATAATACAGCAGACTGGGATCAACTCAGGGTTTCAGTTCCTATGATTTTGACCCTTGGCCTTACTGGAATGACATTCTCTGgtatgta-aaacttatttaattaaag---aatggcattttttttttttaaatataggttgtc--atggttgattttttattacag