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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGAGTCTTCCTCTGATTGTGGAGTTGATGCAGATGGTGATCTGGCTAATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttattgactcatagtatcgtagaaagtgtgcttggtcatattggggctaggatttcataaagttgccaagaatgcattcatcgttaaacatttg...

Basic information

species Arabidopsis thaliana
transcript AT5G63200.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86071220|gb|DR366977.1|DR366977
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071246|gb|DR367003.1|DR367003
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATG
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATG
EST: gi|86071238|gb|DR366995.1|DR366995
EST:     TCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTT
genomic: TCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAA-TGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTT
EST: gi|86071269|gb|DR367026.1|DR367026
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071231|gb|DR366988.1|DR366988
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAA
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAA
EST: gi|86071233|gb|DR366990.1|DR366990
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071268|gb|DR367025.1|DR367025
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCANTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071242|gb|DR366999.1|DR366999
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGC
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGC
EST: gi|86071217|gb|DR366974.1|DR366974
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071225|gb|DR366982.1|DR366982
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCC
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCC
EST: gi|86071244|gb|DR367001.1|DR367001
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAA
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAA
EST: gi|86071271|gb|DR367028.1|DR367028
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071250|gb|DR367007.1|DR367007
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGGAAGATGCCCAAAAATGCTCATGCCCATTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGG-AAGATGCCCAAAAATGCTCATGCCCATTT
EST: gi|86071262|gb|DR367019.1|DR367019
EST:     ATCAAGGGGNCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071237|gb|DR366994.1|DR366994
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCC
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCC
EST: gi|86071243|gb|DR367000.1|DR367000
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATG
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATG
EST: gi|86071272|gb|DR367029.1|DR367029
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071241|gb|DR366998.1|DR366998
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071227|gb|DR366984.1|DR366984
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAA
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAA
EST: gi|86071263|gb|DR367020.1|DR367020
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGNCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071259|gb|DR367016.1|DR367016
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071256|gb|DR367013.1|DR367013
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071253|gb|DR367010.1|DR367010
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGGCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071254|gb|DR367011.1|DR367011
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGGCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071228|gb|DR366985.1|DR366985
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCA
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCA
EST: gi|86071270|gb|DR367027.1|DR367027
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071216|gb|DR366973.1|DR366973
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071235|gb|DR366992.1|DR366992
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAANATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071258|gb|DR367015.1|DR367015
EST:     ATCAAGGGGTCCCTGCATCCCGGGAANAAAAAATCAGTAACCTCCAAATG                         GGTTTGATTCATGTTGCAAGGAA
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAA
EST: gi|86071265|gb|DR367022.1|DR367022
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071236|gb|DR366993.1|DR366993
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071248|gb|DR367005.1|DR367005
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071260|gb|DR367017.1|DR367017
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGNAGATGCCCAAAAATGCTCATGGCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071234|gb|DR366991.1|DR366991
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGNAGATGCCCAAAAATGCTCATGGCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071264|gb|DR367021.1|DR367021
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAGAT-                         --T--GATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
EST: gi|86071251|gb|DR367008.1|DR367008
EST:     ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATG                         GGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT
genomic: ATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttat ... ctgcttatagGGTTTGATTCATGTTGCAAGGAAGATGCCCAAAAATGCTCATGCCCATTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTGAGTCTTCCTCTGATTGTGGAGTTGATGCAGATGGTGATCTGGCTAATCAAGGGGTCCCTGCATCCCGGGAAGAAAAAATCAGTAACCTCAAAATGgtgagtttattgactcatagtatcgtagaaagtgtgcttggtcatattggggctaggatttcataaagttgccaagaatgcattcatcgttaaacatttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtagaaa