1 5' 3' | 2 5' 3' | 3 5' 3' |
ATTTCACTCGTCAGGATTCATCTGCGGAATCATGATTACAGATTCGATCACCAACGCTTCTGCTACTTCAGCTCCGAGAGATTCCGGAAAGAAGAAGAGGgtaacgttatcctctttgataaatctcattcctttctctgaaattgattcaaagttttgatttttaatggttttgttattgcattacgttttgcag
species | Arabidopsis thaliana |
transcript | AT5G62910.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCAACGCTTCTGCTACTTCAGCTCCGAGAGATTCCGGAAAGAAGAAGAGG AACAATAAGTCGGCCTAAGATGAAGCAGAACAAGCTTGGTCTCCGTCGTGAEST: gi|125244501|gb|EL258586.1|EL258586
genomic: CCAACGCTTCTGCTACTTCAGCTCCGAGAGATTCCGGAAAGAAGAAGAGGgtaacgttat ... cgttttgcagAACAATAAGTCGG-CTAAGATGAAGCAGAACAAGCTTGGTCTCCGTCGTGA
EST: CCGGAAAGAAGAAGAGG AACAATAAGTCGGCTAAGATGAAGCAGAACAAGCTTGGTCTCCGTCGTGAG
genomic: CCGGAAAGAAGAAGAGGgtaacgttat ... cgttttgcagAACAATAAGTCGGCTAAGATGAAGCAGAACAAGCTTGGTCTCCGTCGTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTCACTCGTCAGGATTCATCTGCGGAATCATGATTACAGATTCGATCACCAACGCTTCTGCTACTTCAGCTCCGAGAGATTCCGGAAAGAAGAAGAGGgtaacgttatcctctttgataaatctcattcctttctctgaaattgattcaaagttttgatttttaatggttttgttattgcattacgttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG