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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATGGCCTGGGAGAGCTGTCCCTGAGGCGCCTCGTCAATCTTGGGATGGACCAAAACCCATCTCTATCGTTGGATCTACTGGTTCTATTGGCACTCAGgttttatttcgattaaggcattattgtgcagttcttgagtatgaccagactttaagtttgtcttatgaatgactagactcatagaagaatgatatttttttcttactgagttattgttgcatcatttttatcgacaagaacttccattttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G62790.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G62790.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA17G09740.1 (Glycine max), 5'ss of exon 2
AGCATGGCCTGGGAGAGCTGTCCCTGAGGCGCCTCGTCAATCTTGGGATGGACCAAAACCCATCTCTATCGTTGGATCTACTGGTTCTATTGGCACTCAGgttttatttcgattaaggcattattgtgcagttcttgagtatgaccagactttaagtttgtcttatgaatgactagactcatagaagaatgatatttttttcttactgagttattgttgcatcatttttatcgacaagaacttccattttgcag
 || ||||| ||  |||| || || |||       |  |  |||||||||||||||||||||| || || ||||| | ||||||||| ||||| |||||||| ||  | | | |      |            ||| |  ||||  |  || ||    |||  ||  ||||          ||    ||||| | || || |||| | ||  | |||||   ||                              
GGCCTGGCCGGGACGAGCGGTTCCAGAGCAAGGCAGCAAGACTTGGGATGGACCAAAACCCATTTCAATTGTTGGGTGTACTGGTTCAATTGGAACTCAGgtattggtgcaaatggaatttc----------cctttaacatgat-aatctgtag---tgtagtaataatg----------taatgaaatgacaattatt-cttatt-agaaactgttggcccaaa----------------------------