1 5' 3' | 2 5' 3' | 3 5' 3' |
TCAGCTTATTGCTTCCAATTGGCCATACTGGAATCGCACAGAAGGAGCAGACCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGTTTCCATTATCAAgtaaacaatagaatcttttctcagtctctttttctttctatcctaagtaggctttgcttgcttgatcaatacttctacactattctaaatgatggtgtgc...
species | Arabidopsis thaliana |
transcript | AT5G61840.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGTTTCCATTATCAA GAAGAGAAGGCAATAGGAAGAGGAATACTACCCTTGCTTCAACGAGCTACAEST: gi|86040267|gb|DR336022.1|DR336022
genomic: ACCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGTTTCCATTATCAAgtaaacaata ... actgtggcagGAAGAGAAGGCAATAGGAAGAGGAATACTACCCTTGCTTCAACGAGCTACA
EST: ACCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGTTTCCATTATCAA GAAGAGAAGGCAATAGGAAGAGGAATACTACCCTTGCTTCAACGAGCTACAEST: gi|86040269|gb|DR336024.1|DR336024
genomic: ACCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGTTTCCATTATCAAgtaaacaata ... actgtggcagGAAGAGAAGGCAATAGGAAGAGGAATACTACCCTTGCTTCAACGAGCTACA
EST: ACCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGTTTCCATTATCAA GAAGAGAAGGCAATAGGAAGAGGAATACTACCCTTGCTTCAACGAGCTACAEST: gi|164237865|gb|ES027985.1|ES027985
genomic: ACCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGTTTCCATTATCAAgtaaacaata ... actgtggcagGAAGAGAAGGCAATAGGAAGAGGAATACTACCCTTGCTTCAACGAGCTACA
EST: TTGTGCCTCATGACTTTGGAGCCTGTTTCCATTATCAA GAAGAGAAGGCAATAGGAAGAGGAATACTACCCTTGCTTCAACGAGCTACA
genomic: TTGTGCCTCATGACTTTGGAGCCTGTTTCCATTATCAAgtaaacaata ... actgtggcagGAAGAGAAGGCAATAGGAAGAGGAATACTACCCTTGCTTCAACGAGCTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGCTTATTGCTTCCAATTGGCCATACTGGAATCGCACAGAAGGAGCAGACCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGTTTCCATTATCAAgtaaacaatagaatcttttctcagtctctttttctttctatcctaagtaggctttgcttgcttgatcaatacttctacactattctaaatgatggtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgcttg