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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTTGGTCCTCTTTGGAATGATATTCCGCTTTGATTTTTTCTTGAAGAACAGTTTTGTTCTTGTCTTCCTACTTTTCTTGCTTTTTCAGTTTAATATGgtaaaaatccttcattttttctaattagtttttttttttaatgtattatccctagtttttaagttatcaatttacttgtgttgctag

Basic information

species Arabidopsis thaliana
transcript AT5G61690.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G61690.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv17s0000g05850.t01 (Vitis vinifera), 5'ss of exon 4
TTTCTTGGTCCTCTTTGGAATGATATTCCGCTTTGATTTTTTCTTGAAGAACAGTTTTGTTCTTGTCTTCCTACTTTTCTTGCTTTTTCAGTTTAATATGgtaaaaatccttc---attttttctaattagt-----------ttttttttttaatgtat-tatccctagtttttaagttat-caatttacttgtgttgctag-------------
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TTTCATTGTTCTCTTTGGAATGATGTTCCAGTTTGATTTTTTCTTAAACAACAGTTTTTCAGTTGTATTCCTCTTGTTCTTCCTTTTCCAACTCAATATGgtaatttttctttcttattatcctaaattggtcattgattttatttgttcttagacataaataatcctatttcagcatatatatcattcattcatcgtgttggcttgtgattctag