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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCATTGGTGCGGACAGTGTTATACATTGTGGCTCAGTGCCTTGGTGCCATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAGgtttcatcacgtctcaaaactcctatttttttggtttcatagatatatatatatgatcatattacactgttttactaatattggtaatgatatttag

Basic information

species Arabidopsis thaliana
transcript AT5G60660.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502427|gb|HO207967.1|HO207967
EST:     ATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAG                         ATATGGAGGTGGAGCC
genomic: ATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAGgtttcatcac ... tgatatttagATATGGAGGTGGAGCC
EST: gi|19876401|gb|AU237232.1|AU237232
EST:     ATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAG                         ATATGGAGGTGGAGCCAACGAGCTAGCCGATGGCTACAACAAAGGTACCGG
genomic: ATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAGgtttcatcac ... tgatatttagATATGGAGGTGGAGCCAACGAGCTAGCCGATGGCTACAACAAAGGTACCGG
EST: gi|301502396|gb|HO207936.1|HO207936
EST:     ATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAG                         ATATGGAGGTGGAGCCAACGAGCTAGCCGATGGCTACAACAAAGGTACCGG
genomic: ATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAGgtttcatcac ... tgatatttagATATGGAGGTGGAGCCAACGAGCTAGCCGATGGCTACAACAAAGGTACCGG
EST: gi|116445951|gb|EG488543.1|EG488543
EST:     ATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAG                         ATATGGAGGTGGAGCCAACGAGCTAGCCGATGGCTACAACAAAGGTACCGG
genomic: ATCTGCGGTTGCGGTTTCGTCAAAGCATTCCAAAGTTCTTACTACACCAGgtttcatcac ... tgatatttagATATGGAGGTGGAGCCAACGAGCTAGCCGATGGCTACAACAAAGGTACCGG