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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACTGAAGCCTATGCACAAGAAGCTATTGAAGCTATCAAATCCGAAAAAGTTATTGCTGTGCCTACCGATACGCTTTATGGCTTCGCTTGTGATGCTTGgtaatctaaaaatcttcactttatcagctgatataaccttttacattgcctggactaagttgtgatttatgtaacatgacag

Basic information

species Arabidopsis thaliana
transcript AT5G60590.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G60590.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os03g10450.1 (Oryza sativa), 5'ss of exon 2
CAACTGAAGCCTATGCACAAGAAGCTATTGAAGCTATCAAATCCGAAAAAGTTATTGCTGTGCCTACCGATACGCTTTATGGCTTCGCTTGTGATGCTTGgt-aatctaa--aaatcttcactttat-cagctgatataaccttttacattgcctggactaagttgtgatttatgtaacatgacag--------------
||||  | |   |||      |||| |||||  | || ||    |   |||| ||||| ||||| ||||||||| |||||||||| ||||||||||| |||| | | | |  |||  | || ||| | |     || | |   ||  ||||  ||    |    | |  ||    |   |   |                
CAACAAATGATCATGTCATGAAAGCAATTGACTCAATTAACAGGGGGCAAGTGATTGCGGTGCCCACCGATACGATTTATGGCTTTGCTTGTGATGCATGgttagttttactaaaagtacattttgtgccaagaattttattcttctcatttgctttgttgtcctattgttctcatgttaactccaatttaacaccttct

upper sequence: AT5G60590.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv06s0004g02920.t01 (Vitis vinifera), 5'ss of exon 2
CAACTGAAGCCTATGCACAAGAAGCTATTGAAGCTATCAAATCCGAAAAAGTTATTGCTGTGCCTACCGATACGCTTTATGGCTTCGCTTGTGATGCTTGgtaatctaaaaatcttcactttatcagctgatataaccttttacattgcctggactaagttgtgatttatgtaacatgacag--------------------------
|||| || ||  | ||  ||||||| ||||||||||||||  | |  || || ||||| ||||| || ||||| || ||||| |||||||||||||||||||||  |     || | | ||| |    || | ||   || | |||||   |       |||  ||||  ||   | | |||                          
CAACAGATGCTCACGCGGAAGAAGCAATTGAAGCTATCAAGGCAGGGAAGGTCATTGCCGTGCCCACTGATACCCTCTATGGATTCGCTTGTGATGCTTGgtaaatt---tttccttaatttttttcttggt-tatttttgtgcattgtaggtgt----ttgatatttgagttgaaagtcagttttattgtcattttattttattttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164169789|gb|EL989350.1|EL989350
EST:     GTTNTTGCTGTGCCTACCGATACGCTTTATGGCTTCGCTTGTGATGCTTG                         TTCTTTAGAAGCGGTTAGCCGGATTTATGAGATCAAAGGGCG
genomic: GTTATTGCTGTGCCTACCGATACGCTTTATGGCTTCGCTTGTGATGCTTGgtaatctaaa ... aacatgacagTTCTTTAGAAGCGGTTAGCCGGATTTATGAGATCAAAGGGCG
EST: gi|164083197|gb|EL980443.1|EL980443
EST:     GTTATTGCTGTGCCTACCGATACGCTTTATGGCTTCGCTTGTGATGCTTG                         TTCTTTAGAAGCGGTTAGCCGGATTTATGAGATCAAAGGGCG
genomic: GTTATTGCTGTGCCTACCGATACGCTTTATGGCTTCGCTTGTGATGCTTGgtaatctaaa ... aacatgacagTTCTTTAGAAGCGGTTAGCCGGATTTATGAGATCAAAGGGCG
EST: gi|124722807|gb|EH814209.1|EH814209
EST:     TTATTGCTGCGTCCTACCGATACGCTTTATGGCTTCGCTTGTGATGCTTG                         TTCTTTAGAAGCGGTTAGCCGGATTTATGAGATCAAAGGG
genomic: TTATTGCTGTG-CCTACCGATACGCTTTATGGCTTCGCTTGTGATGCTTGgtaatctaaa ... aacatgacagTTCTTTAGAAGCGGTTAGCCGGATTTATGAGATCAAAGGG