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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGTATGTACAATGCTGAGAAGAGAGGGAAGAGGCAAGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACGgtatgttgatcctgcattgtttagctcattttcacattttgtaataaccttgattctgtgtttgatcaactgttttaacatttttgatgaaactgcag

Basic information

species Arabidopsis thaliana
transcript AT5G59850.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G59850.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G083497_T04 (Zea mays), 5'ss of exon 1
AAGAGTATGTACAATGCTGAGAAGAGAGGGAAGAGGCAAGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACGgtatgttgatcctgcattgtttagctcattttcacattttgtaataacctt-gattctgtgtttgatcaactgttttaacatttttgatgaaactgcag
|||   ||||||||||| |||||||| || |||||||| |||||||||||||| || || || |||||||||||||| || |  |||||||||   || |||    |  | ||  ||    |  | |||||   || || | |  |  |   |  |  ||   |||| |  || | ||  |||                
AAGTCCATGTACAATGCAGAGAAGAGGGGCAAGAGGCAGGTCATGATCAGGCCGTCGTCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGTCATGgt----tagttctcaatctcgtgccccattt---caattggcagcattccgaggatacgtacctgattag-tgctatattattag--------------

upper sequence: AT5G59850.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G177720_T01 (Zea mays), 5'ss of exon 1
AAGAGTATGTACAATGCTGAGAAGAGAGGGAAGAGGCAAGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACGgtatgttgatcctgcattgtttagctcattttcac-attttgtaataaccttgattctgtgtttgatcaactgttttaacatttttgatgaaactgcag
|||   |||||||| ||||||||||  || |||||||| |||||||||||||| || || || || ||||||||||| || |  |||||||||   ||||||  | |    ||  |   | |  |   |||  |  | |   |    |       ||  || |   |   ||||| |                      
AAGTCCATGTACAACGCTGAGAAGATCGGCAAGAGGCAGGTCATGATCAGGCCGTCGTCCAAGGTCATCATCAAGTTCCTGACGGTCATGCAGCGCCACGgttagctagcactcgaccttatgccctgtttcaatgactccattccgaggacatgtccatgatcattgtgctgttatgtag------------------

upper sequence: AT5G59850.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G018228_T04 (Zea mays), 5'ss of exon 2
AAGAGTATGTACAATGCTGAGAAGAGAGGGAAGAGGCAAGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACGgtatgttgatcctgcattgtttagctcattttcacattttgtaataaccttgattctgtgtttgatcaactgttttaacatttttgatgaaactgcag
|||   |||||||||||||| |||| ||||||  | || |||||||||||||| || || || |||||||||||||| || |  |||||||||   || |||  |      |  ||   ||  || |||||    |||   | ||      ||| | |    |||| |  | || |   || || |            
AAGTCCATGTACAATGCTGAAAAGATAGGGAAACGTCAGGTCATGATCAGGCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAGCGCCATGgttagcc--ctcctcaaccttatgcccattt--gaattgcttcattctgaggatac-gcccctgatta-ttattgttctatattag------------

upper sequence: AT5G59850.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G328578_T01 (Zea mays), 5'ss of exon 2
AAGAGTATGTACAATGCTGAGAAGAGAGGGAAGAGGCAAGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACGgtatgttgatcctgcattgtttagctcattttcacattttgtaataaccttgattctgtgtttgatcaactgttttaacatttttgatgaaactgcag
|||   |||||||||||||| |||| ||||||  | || |||||||||||||| || || || |||||||||||||| || |  ||||||||    || |||  |      |  ||   ||  || |||||    |||   | ||      ||| | ||   |||| |  | || |   || || |            
AAGTCCATGTACAATGCTGAAAAGATAGGGAAACGTCAGGTCATGATCAGGCCGTCATCCAAGGTGATCATCAAGTTCCTGACGGTCATGCAACGCCATGgttagcc--ctcctcaaccttatgcccattt--gaattgcttcattctgaggatac-gtccctgatta-ttattgttctatattag------------

upper sequence: AT5G59850.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G000801_T01 (Zea mays), 5'ss of exon 1
AAGAGTATGTACAATGCTGAGAAGAGAGGGAAGAGGCAAGTCATGATCAGGCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACGg-tatgttgatcctgcattgtttagctcattttcacattttgtaataaccttgattctgtgtttgatcaactgttttaacatttttgatgaaactgcag-----------------------
         |||||||| |||||||| || |||||||| ||||||||||| || || || || |||||||| |||||  | |  |||||||||   || || ||  ||| |   |     ||  |   ||  |||||         | | |   |  ||    ||| | |  |  | ||||  |  | || || |                           
---------TACAATGCAGAGAAGAGGGGCAAGAGGCAGGTCATGATCAGACCGTCGTCCAAGGTGATCATTAAGTTCATGACGGTCATGCAGCGTCATGGATACATTGgtga-gttcgattacgtggatgatcacagagcccggaagctt--gtggtggaactgaacgatagactaaacaaatgcggtgtaattagcccctggttcgactttggaataaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152037907|gb|BP802584.2|BP802584
EST:     GCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACG                         GTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGAAAGATCG
genomic: GCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACGgtatgttgat ... gaaactgcagGTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGAAAGATCG
EST: gi|86080051|gb|DR375808.1|DR375808
EST:     GCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACG                         GTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGAAAGATCG
genomic: GCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACGgtatgttgat ... gaaactgcagGTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGAAAGATCG
EST: gi|125213058|gb|EL227981.1|EL227981
EST:     TCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACG                         GTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGAAAGATCG
genomic: TCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACGgtatgttgat ... gaaactgcagGTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGAAAGATCG
EST: gi|86052270|gb|DR348027.1|DR348027
EST:     GCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACG                         GTTACATTGGTGAGTTTGAGTACGTTGATGACGACAGGTCTGGAAAGATCG
genomic: GCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACGgtatgttgat ... gaaactgcagGTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGAAAGATCG
EST: gi|86081708|gb|DR377465.1|DR377465
EST:     GCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACG                         GTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGAAAGATCG
genomic: GCCTTCCTCTAAAGTGATCATCAAGTTTCTTATCGTCATGCAGAAACACGgtatgttgat ... gaaactgcagGTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGAAAGATCG
EST: gi|125054014|gb|EL124898.1|EL124898
EST:     TGCAGAAACACG                         GTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGAAAGATCG
genomic: TGCAGAAACACGgtatgttgat ... gaaactgcagGTTACATTGGTGAGTTTGAGTACGTTGATGACCACAGGTCTGGAAAGATCG