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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGTTCTGTTCTACATTGCAGTGCTTGCAGGGCTTCTCCACCGATTTCCTGTTAACTTTTCCCAGgtttgcatattcatgataccgtaatgtggttgtttaagttaaggccatgtgcacttttcttaaaagctgtgaggtatacacag

Basic information

species Arabidopsis thaliana
transcript AT5G58870.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58870.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA0028S00210.2 (Glycine max), 5'ss of exon 2
ATAGTTCTGTTCTACATTGCAGTGCTTGCAGGGCTTCTCCACCGATTTCCTGTTAACTTTTCCCAGgt------ttgcatattcatgataccgtaat---gtgg------ttgtttaagttaag---------gccatg------tgcacttttcttaaaagctgtgaggtatacacag
||||   |||| ||   ||| |||||||||||||||||||| ||||| ||||| | |||||| |||||      ||||||  |      | | ||||    |||      || |  ||  || |         ||  |       |||| ||||||||| |  |||  | | |   |||
ATAGCCTTGTTTTATGCTGCTGTGCTTGCAGGGCTTCTCCATCGATTCCCTGTAAGCTTTTCTCAGgtgtgagtttgcattcttgctccatcttaattccttggaccttcttatacaacgtatgtttcccgcagctttaaaatgatgcatttttcttaataattgtatgctgtgtgcag

upper sequence: AT5G58870.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA14G37090.1 (Glycine max), 5'ss of exon 3
ATAGTTCTGTTCTACATTGCAGTGCTTGCAGGGCTTCTCCACCGATTTCCTGTTAACTTTTCCCAGgtttgcatattcatgataccgtaatgtggttgtttaagttaaggccatgtgcacttttcttaaaagctgtgaggtatacacag------------------------------------------
||||   |||| ||   |||  ||||||||||||||||||| ||||| |||||||  ||||| |||||  |  |  |     | ||    |    ||   |    | ||||| |     ||| ||  |     | ||  || ||||||                                           
ATAGCCTTGTTTTATTGTGCTCTGCTTGCAGGGCTTCTCCATCGATTCCCTGTTAGTTTTTCTCAGgtaagtgtgatttccttccccctctcaatttcaattttcttaggcctt-----cttatccaacggcttatgttgtctacacattttaaaacagcatttatttgagaaattgaatgctatgtgcag

upper sequence: AT5G58870.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv06s0004g06120.t01 (Vitis vinifera), 5'ss of exon 2
ATAGTTCTGTTCTACATTGCAGTGCTTGCAGGGCTTCTCCACCGATTTCCTGTTAACTTTTCCCAGgtttgcatattcatgataccgtaatgtggttgtttaagttaaggcca-tgtgcacttttcttaaaagctgtgag-----gtatacacag
|| |   |||||||  |||| ||||||||||| |||||||||||||||||||| | |||||| ||||| || ||     || | |  | || |     || ||  ||| || | | ||||      |   |    ||||         |||||||
ATTGCATTGTTCTATGTTGCTGTGCTTGCAGGTCTTCTCCACCGATTTCCTGTAAGCTTTTCTCAGgtgtgtatgagtgtgttgctttcatttacc--ttgaaactaatgctaatttgcaaggaattctgagtgagtgaatgcctacctacacag