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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCTGGAACTGTGAAGTTATTGAAGCATAAGGAAACTGGAAAAGTTCGTCTTGTTATGAGACAATCTAAAACCCTAAAGATCTGTGCCAATCACCTCAgtatgtttgattctctctcgaagaagatcttttttttttttcttcgaaagggctaaactttatgtatcttttgttgaaattatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G58590.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58590.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv08s0217g00030.t01 (Vitis vinifera), 5'ss of exon 2
GGAGCTGGAACTGTGAAGTTATTGAAGCATAAGGAAACTGGAAAAGTTCGTCTTGTTATGAGACAATCTAAAACCCTAAAGATCTGTGCCAATCACCTCAgtatgtttgattctctctcgaagaagatcttttttttttttcttcgaaagggctaaactttat----gtatcttttgttgaaattatgcag---------
|| | ||||||||||||||| |||||||| || |   | || |||||| | ||||||||| | ||||| || |||||||||||||| || ||||| ||  ||   |||   ||| | |    |    | | ||||||||       |  |  | |    ||||    | |     || |  || |||   |         
GGCGTTGGAACTGTGAAGTTCTTGAAGCACAAAGGGTCGGGCAAAGTTAGGCTTGTTATGCGCCAATCGAAGACCCTAAAGATCTGCGCTAATCATCTAGgttactttttatctttgtttttgtttttttgttttttttgatgattattgctccatttgttatccaagaaatgcctgatacaactatttggttaattttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072489|gb|DR368246.1|DR368246
EST:     TCTTGTTATGAGACAATCTAAAACCCTAAAGATCTGTGCCAATCACCTCA                         TTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTT
genomic: TCTTGTTATGAGACAATCTAAAACCCTAAAGATCTGTGCCAATCACCTCAgtatgtttga ... aattatgcagTTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTT
EST: gi|116477948|gb|EG520540.1|EG520540
EST:     TCTTGTTATGAGACAATCTAAAACCCTAAAGATTTGTGCCAATCACCTCA                         TTTCGTTTGGGATGGGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTT
genomic: TCTTGTTATGAGACAATCTAAAACCCTAAAGATCTGTGCCAATCACCTCAgtatgtttga ... aattatgcagTTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTT
EST: gi|164012838|gb|ES119939.1|ES119939
EST:     TGTTATGAGACAATCTAAAACCCTAAAGATCTGTGTCCAATCACCTCA                         TTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATAGAAAAGTCTTGT
genomic: TGTTATGAGACAATCTAAAACCCTAAAGATCTGTG-CCAATCACCTCAgtatgtttga ... aattatgcagTTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAAT-GAAAAGTCTTGT
EST: gi|116472788|gb|EG515380.1|EG515380
EST:     TCTTGTTATGAGACAATCTAAAACCCTAAAGATCTGTGCCAATCACCTCA                         TTTCGTCTGGGATGGGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTT
genomic: TCTTGTTATGAGACAATCTAAAACCCTAAAGATCTGTGCCAATCACCTCAgtatgtttga ... aattatgcagTTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTT
EST: gi|125268423|gb|EL282508.1|EL282508
EST:     ATCTGTGCCAATCACCTCA                         TTTCGTCT-GGATGAGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTT
genomic: ATCTGTGCCAATCACCTCAgtatgtttga ... aattatgcagTTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATGAAAAGTCTTGTT