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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGTATCAAACGCGTAGAATCCACCAAATCAAATCCATGGTGGTGGGATAGTCATATCGGTCTCAAAAATTCTAAGTGGCTTGAGAATAATCTCGATGgtgagtccattcacattatgtcgttttcatgtaatgaaaataccttattaggcttagggtttcccaaattaggtggttagtcttttttcataaaggaaataaaaaatatgccaagtttatgttttgtgtgatgattatgatcag

Basic information

species Arabidopsis thaliana
transcript AT5G58320.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58320.3 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv06s0004g08170.t01 (Vitis vinifera), 5'ss of exon 4
AAGAGTATCAAACGCGTAGAATCCACCAAATCAAATCCATGGTGGTGGGATAGTCATATCGGTCTCAAAAATTCTAAGTGGCTTGAGAATAATCTCGATGgtgagtccattcacattatgtcgttttcatgtaatgaaaataccttattaggcttagggtttcccaaattaggtggttagtcttttttcataaaggaaataaaaaatatgc-caagtttatgttttgtgtgatgattatgatcag
|||| | | ||  |   |||||| |  |||||| || | ||||||||||||||||||||| ||| |||||| || |||||||| |   ||||||| || ||||||      ||  | ||   | | |  ||| || |      ||| ||||        ||||  |     |   |     | |  |  | ||||  |  | || |   || || |                             
AAGAATCTGAAGAGGACAGAATCTAAGAAATCACATTCCTGGTGGTGGGATAGTCATATCAGTCCCAAAAACTCCAAGTGGCTCGCTGATAATCTTGAGGgtgag------caactaatactgctatt-tgttattat----tcttgttagt-------tttctaatgcctgactgcagagcatgctatacaaagagatcataagaagggcacatgcc---------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072850|gb|DR368607.1|DR368607
EST:     TAGTCATATCGGTCTCAAAAATTCTAAGTGGCTTGAGAATAATCTCGATG                         AGATGGACCGGAGCGTGAAACGGATGGTGAAGTTGATAGAGGAGGATGCAG
genomic: TAGTCATATCGGTCTCAAAAATTCTAAGTGGCTTGAGAATAATCTCGATGgtgagtccat ... ttatgatcagAGATGGACCGGAGCGTGAAACGGATGGTGAAGTTGATAGAGGAGGATGCAG
EST: gi|19874799|gb|AU235630.1|AU235630
EST:     TAGTCATATCGGTCTCAAAAATTCTAAGTGGCTTGAGAATAATCTCGATG                         AGATGGACCGGAGCGTGAAACGGATGGTGAAGTTGATAGAGGAGGATGCAG
genomic: TAGTCATATCGGTCTCAAAAATTCTAAGTGGCTTGAGAATAATCTCGATGgtgagtccat ... ttatgatcagAGATGGACCGGAGCGTGAAACGGATGGTGAAGTTGATAGAGGAGGATGCAG