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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTGGAAAGACTATGTTGGCTAAGGCTGTTGCCAATCACACAACTGCTGCCTTCATTAGGGTTGTTGGATCCGAGTTTGTGCAAAAGTATCTCGGCGAGgtattaaaaatcatagctttattgaaggtttaggtcctattgagcgattctatttggtgactaactggttttttaattgcag

Basic information

species Arabidopsis thaliana
transcript AT5G58290.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58290.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G31470.1 (Glycine max), 5'ss of exon 2
TACTGGAAAGACTATGTTGGCTAAGGCTGTTGCCAATCACACAACTGCTGCCTTCATTAGGGTTGTTGGATCCGAGTTTGTGCAAAAGTATCTCGGCGAGgtattaa----aaatcatagctttattgaaggtttaggtcctattgagcgattctatttggtgactaactggtttttt---aattgcag-----------
 ||||| || || ||| | || || |||||||| ||||| || ||||| |||||||| |||||||| ||||| |||||||||||||||||||| || ||||||| |     || ||||     | | || |   |     | ||   |  | |   | || |  ||   |   |||||   ||||   |           
CACTGGCAAAACAATGCTTGCCAAAGCTGTTGCTAATCATACCACTGCCGCCTTCATCAGGGTTGTAGGATCTGAGTTTGTGCAAAAGTATCTTGGTGAGgtatgatttttaagtcatcttcatttggatgcgatgttgacaatgttgtaacttactctgctatctttgtttctttttgaaaattatgggtttccaattc

upper sequence: AT5G58290.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv06s0004g08220.t01 (Vitis vinifera), 5'ss of exon 2
TACTGGAAAGACTATGTTGGCTAAGGCTGTTGCCAATCACACAACTGCTGCCTTCATTAGGGTTGTTGGATCCGAGTTTGTGCAAAAGTATCTCGGCGAGgtat--taaaaatcata--gctttattgaaggtttaggtcctattgagcgattctatttggtgactaactggttttttaattgcag---------------------
 ||||| || || ||| | |||||||||||||| ||||| || |||||||| ||||| || ||||| || || || ||||| || |||||| | || |||||||  | | ||| |||     || |||||    |||| | | |   | | || |  ||  | |   ||   |  | |||| ||||                     
CACTGGTAAAACCATGCTTGCTAAGGCTGTTGCAAATCATACTACTGCTGCTTTCATCAGAGTTGTGGGTTCAGAATTTGTTCAGAAGTATTTGGGTGAGgtatgcttagaataatattatcttgttgaaaa--taggccatgt---gtgtttatgcttccttaactac--atcctgtaatggcagaccatttattcatttatcttt

upper sequence: AT5G58290.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S243_67V6.1 (Physcomitrella patens), 5'ss of exon 2
TACTGGAAAGACTATGTTGGCTAAGGCTGTTGCCAATCACACAACTGCTGCCTTCATTAGGGTTGTTGGATCCGAGTTTGTGCAAAAGTATCTCGGCGAGgta-----ttaaaaatcatagctttattgaaggtttaggtc-ctattga-gcgattctatttggtgactaactggttttttaattgcag-----------
 || |||||||| ||| | || ||||| || ||  ||||||| || || || |||||  | |||||||| || |||||||| |||||||||||||| ||||||     |     || || || | || ||  ||    ||| || |||  | ||    |     |   | | |   | | || |                
AACGGGAAAGACCATGCTTGCCAAGGCAGTCGCTCATCACACTACCGCCGCTTTCATCCGTGTTGTTGGTTCTGAGTTTGTACAAAAGTATCTCGGAGAGgtaaggcttgcggcataatcgcctcatagagtgtcgctgtctctgttgctgtgaccagaagctttcttttagtttatctctactcatgtgatgagttcaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125085979|gb|EL145619.1|EL145619
EST:     GTGCAAAAGTATCTCGGCGAG                         GGACCTCGTATGGTTCGTGATGTCTTCCGTCTTGCCAAGGAAAATGCTCCA
genomic: GTGCAAAAGTATCTCGGCGAGgtattaaaaa ... ttaattgcagGGACCTCGTATGGTTCGTGATGTCTTCCGTCTTGCCAAGGAAAATGCTCCA
EST: gi|116423148|gb|EG465740.1|EG465740
EST:     CCTTCATTAGGGTTGTTGGATCCGAGTTTGTGCAAAAGTATCTCGGCGAG                         GGACCTCGTATGGTTCGTGATGTCTTCCGTCTTGCCAAGGAAAATGCTCCA
genomic: CCTTCATTAGGGTTGTTGGATCCGAGTTTGTGCAAAAGTATCTCGGCGAGgtattaaaaa ... ttaattgcagGGACCTCGTATGGTTCGTGATGTCTTCCGTCTTGCCAAGGAAAATGCTCCA
EST: gi|124996123|gb|EL068392.1|EL068392
EST:     CCGAGTTTGTGCAAAAGTATCTCGGCGAG                         GGACCTCGTATGGTTCGTGATGTCTTCCGTCTTGCCAAGGAAAATGCTCCA
genomic: CCGAGTTTGTGCAAAAGTATCTCGGCGAGgtattaaaaa ... ttaattgcagGGACCTCGTATGGTTCGTGATGTCTTCCGTCTTGCCAAGGAAAATGCTCCA
EST: gi|163981724|gb|ES042210.1|ES042210
EST:     GCAAAAGTATCTCGGCGAG                         GGACCTCGTATGGTTCGTGATGTCTTCCGTCTTGCCAAGGAAAATGACTCC
genomic: GCAAAAGTATCTCGGCGAGgtattaaaaa ... ttaattgcagGGACCTCGTATGGTTCGTGATGTCTTCCGTCTTGCCAAGGAAAATG-CTCC
EST: gi|164070613|gb|ES210827.1|ES210827
EST:     CCTTCATTAGGGTTGTTGGATCCGAGTTTGTGCAAAAGTATCTCGGCGAG                         GGACCTCGTATGGTTCGTGATGTCTTCCGTCTTGCCAAGGAAA
genomic: CCTTCATTAGGGTTGTTGGATCCGAGTTTGTGCAAAAGTATCTCGGCGAGgtattaaaaa ... ttaattgcagGGACCTCGTATGGTTCGTGATGTCTTCCGTCTTGCCAAGGAAA
EST: gi|125044376|gb|EL116645.1|EL116645
EST:     TTCATTAGGGTTGTTGGATCCGAGTTTGTGCAAAAGTATCTCGGCGAG                         GGACCTCGTATGGTTCGTGATGTCTTCCGTCTTGCCAAGGAAAATG
genomic: TTCATTAGGGTTGTTGGATCCGAGTTTGTGCAAAAGTATCTCGGCGAGgtattaaaaa ... ttaattgcagGGACCTCGTATGGTTCGTGATGTCTTCCGTCTTGCCAAGGAAAATG
EST: gi|164176288|gb|ES028940.1|ES028940
EST:     CCTTCATTAGGGTTGTTGGATCCGAGTTTGTGCAAGAGTATCTCGGCGAG                         GGACCTCGTATGGTTCGTGATGTCTTCCGTCTTGCAAAGG
genomic: CCTTCATTAGGGTTGTTGGATCCGAGTTTGTGCAAAAGTATCTCGGCGAGgtattaaaaa ... ttaattgcagGGACCTCGTATGGTTCGTGATGTCTTCCGTCTTGCCAAGG
EST: gi|164206071|gb|ES170606.1|ES170606
EST:     TTAGGGTTGTTGGATCCGAGTTTGTGCAAAAGTATCTCGGCGAG                         GGACCTCGTATGGTTCGTGATGTCTTCCGTCTTGCCAAGGAAAATGCTCCA
genomic: TTAGGGTTGTTGGATCCGAGTTTGTGCAAAAGTATCTCGGCGAGgtattaaaaa ... ttaattgcagGGACCTCGTATGGTTCGTGATGTCTTCCGTCTTGCCAAGGAAAATGCTCCA