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TCATCTTCAGAGATTAAGTGTAAGGATGGATCAAAGAAATTCACGAAAGCTCAGCTTAATGACGATTTCTGTGATTGTTCAGATGGAACTGACGAGCCAGgttcttttcattttctcaatttctcttcttctcataagcattttgtgtttttcgattggattgattcttctctgttgaacaaaaattgtgtagcttttct...
species | Arabidopsis thaliana |
transcript | AT5G56360.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCAGCTTAATGACGATTTCTGTGATTGTTCAGATGGAACTGACGAGCCAG GTACCTCAGCTTGTCCAACTGGAAAATTCTEST: gi|152034153|gb|BP868841.2|BP868841
genomic: TCAGCTTAATGACGATTTCTGTGATTGTTCAGATGGAACTGACGAGCCAGgttcttttca ... aaaactccagGTACCTCAGCTTGTCCAACTGGAAAATTCT
EST: TCAGCTTAATGACGATTTCTGTGATTGTTCAGATGGAACTGACGAGCCAG GTACCTCAGCTTGTCCAACTGGAAAATTCTATTGCCGGAAGGCCGGCCACTEST: gi|86068203|gb|DR363960.1|DR363960
genomic: TCAGCTTAATGACGATTTCTGTGATTGTTCAGATGGAACTGACGAGCCAGgttcttttca ... aaaactccagGTACCTCAGCTTGTCCAACTGGAAAATTCTATTGCCGGAACGCCGGCCACT
EST: TCAGCTTAATGACGATTTCTGTGATTGTTCAGATGGAACTGACGAGCCAG GTACCTCAGCTTGTCCAACTGGAAAATTCTATTGCCGGAACGCCGGCCACT
genomic: TCAGCTTAATGACGATTTCTGTGATTGTTCAGATGGAACTGACGAGCCAGgttcttttca ... aaaactccagGTACCTCAGCTTGTCCAACTGGAAAATTCTATTGCCGGAACGCCGGCCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATCTTCAGAGATTAAGTGTAAGGATGGATCAAAGAAATTCACGAAAGCTCAGCTTAATGACGATTTCTGTGATTGTTCAGATGGAACTGACGAGCCAGgttcttttcattttctcaatttctcttcttctcataagcattttgtgtttttcgattggattgattcttctctgttgaacaaaaattgtgtagcttttct
- - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaa