1 5' 3' | 2 5' 3' | 3 5' 3' |
ACATGGGTTTCCTTATAACAACCCTAATCTTCGTCGTCGTTGGGATAATTGCTTCTCTATGCGTTAGAATCTGCTGCAACAGAGGCCCCTCCACGAATCTgtatgtttccttgctttgcaaatttgatatttctgaatccttttagtaaattgacaatgttagtgagggtaatttggctacctatgattcaatggagtta...
species | Arabidopsis thaliana |
transcript | AT5G55290.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGTTAGAATCTGCTGCAACAGAGGCCCCTCCACGAATCT GCTACATCTTACCTTGGTCATTACTGCGACGGTCTGCTGTTGGATGATGTGEST: gi|124796537|gb|EH886216.1|EH886216
genomic: CGTTAGAATCTGCTGCAACAGAGGCCCCTCCACGAATCTgtatgtttcc ... ctgataacagGCTACATCTTACCTTGGTCATTACTGCGACGGTCTGCTGTTGGATGATGTG
EST: CTGCAACAGAGGCCCCTCCACGAATCT GCTACATCTTACCTTGGTCATTACTGCGACGGTCTGCTGTTGGATGATEST: gi|116410595|gb|EG453187.1|EG453187
genomic: CTGCAACAGAGGCCCCTCCACGAATCTgtatgtttcc ... ctgataacagGCTACATCTTACCTTGGTCATTACTGCGACGGTCTGCTGTTGGATGAT
EST: GCTTCTCTATGCGTTAGAATCTGCTGCAACAGAAGCCCCTCCACGAATCT GCTACATCTTACCTTGGTCATTACTGCGACGGTCTGCTGTTGGATGATEST: gi|86075966|gb|DR371723.1|DR371723
genomic: GCTTCTCTATGCGTTAGAATCTGCTGCAACAGAGGCCCCTCCACGAATCTgtatgtttcc ... ctgataacagGCTACATCTTACCTTGGTCATTACTGCGACGGTCTGCTGTTGGATGAT
EST: GCTTCTCTATGCGTTAGAATCTGCTGCAACAGAGGCCCCTCCACGAATCT GCTACATCTTACCTTGGTCATTACTGCGACGGTCTGCTGTTGGATAAT
genomic: GCTTCTCTATGCGTTAGAATCTGCTGCAACAGAGGCCCCTCCACGAATCTgtatgtttcc ... ctgataacagGCTACATCTTACCTTGGTCATTACTGCGACGGTCTGCTGTTGGATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATGGGTTTCCTTATAACAACCCTAATCTTCGTCGTCGTTGGGATAATTGCTTCTCTATGCGTTAGAATCTGCTGCAACAGAGGCCCCTCCACGAATCTgtatgtttccttgctttgcaaatttgatatttctgaatccttttagtaaattgacaatgttagtgagggtaatttggctacctatgattcaatggagtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC