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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACCTGTCTACAAAGCTCAAATGTCTACTGGTGAGATCGTGGCTGTGAAAGTTCTAGCCACTGATTCTAAACAGGGCGAAAAAGAGTTTCAGACAGAGgtaagatatatctatggattcatttccgaagaacaagttagtgtgtaaaacatgtagcattaggcagacttttaagcattacaataggctttctgaaatc...

Basic information

species Arabidopsis thaliana
transcript AT5G54590.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G54590.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA13G36140.1 (Glycine max), 5'ss of exon 3
TGGACCTGTCTACAAAGCTCAAATGTCTACTGGTGAGATCGTGGCTGTGAAAGTTCTAGCCACTGATTCTAAACAGGGCGAAAAAGAGTTTCAGACAGAGgt-aagata-tatctatggattcatttccgaagaacaagttagtgtgtaaaacatgtagcattaggcagacttttaagcattacaataggctttctgaaatc
||| ||||| || |||||||| ||||||||||| ||||  ||||| || |||||||| || ||| ||||||| || || || ||||| |||||||||||||| |||||| ||  | |  |||  |||  |  ||| ||     | ||   | ||  || | ||  | | | |   ||     | ||||   ||| |   || 
TGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTGGCAGTCAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGgtgaagataataatttttcattactttggggtgaataaaagtat-tgatgaccacatatccttttggaaaatcaaaacatgaaaaatattatttttactat-

upper sequence: AT5G54590.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA12G34410.1 (Glycine max), 5'ss of exon 3
TGGACCTGTCTACAAAGCTCAAATGTCTACTGGTGAGATCGTGGCTGTGAAAGTTCTAGCCACTGATTCTAAACAGGGCGAAAAAGAGTTTCAGACAGAGgt-aagata-tatctatggattcatttccgaagaacaagttagtgtgtaaaacatgtagcattaggcagacttttaagcattacaataggctttctgaaatc
||| ||||| || |||||||| ||||||||||| ||||  || || || |||||||| || ||| ||||||| || || || ||||| |||||||||||||| |||||| ||  |    |||  |||  || | | |      | ||| |   |  || ||||  | | | |   || ||  | ||      || |   || 
TGGTCCTGTATATAAAGCTCAGATGTCTACTGGCGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCAGACAGAGgtgaagataataatttctcattactttgagatgcatagaagtat-tgttagctacatatcattttgaaaaatca-aaacacgagaaatacgattttactata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125088738|gb|EL147365.1|EL147365
EST:     AAGTTCTAGCCACTGATTCTAAACAGGGCGAAAAAGAGTTTCAGACAGAG                         GTTATGTTATTGGGAAGGTTGCATCACCGTAACCTAGTGAA
genomic: AAGTTCTAGCCACTGATTCTAAACAGGGCGAAAAAGAGTTTCAGACAGAGgtaagatata ... atcttttcagGTTATGTTATTGGGAAGGTTGCATCACCGTAACCTAGTGAA