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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCATTTGGGCCACTTTCTTCTTTCAAGATTGTTGATTGATGACTTGAAGAACTCCGATTATCCATCAAAACGTCTCATCATTGTTGGATCCATAACCGgtctgtagtctcctcataagaagaatgctttatgtacttactacttactctaaaccctaaatctgaaatcttattcgttttgtttcttattgagcag

Basic information

species Arabidopsis thaliana
transcript AT5G54190.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G54190.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv12s0059g00270.t01 (Vitis vinifera), 5'ss of exon 3
AACCATTTGGGCCACTTTCTTCTTTCAAGATTGTTGATTGATGACTTGAAGAACTCCGATTATCCATCAAAACGTCTCATCATTGTTGGATCCATAACCGgtctgtagtct--cctcataa---gaagaatgctttatgtacttactactt-actctaaaccctaaatctgaaatcttattcgttttgtttcttattgagcag
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AACCATCTTGGACACTTCCTTCTCTCAAGATTGCTGCTTGATGACCTGAAGCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtac-tagttcaacttcagaacctgccaaggatgtgaaatttttaatgtttcacaatacaaccacagtgaaaaaattgagacttaaaacagtttcaagaat--