1 5' 3' | 2 5' 3' |
CAAAGGAAGAGCTCCGAAAGGAGAGAAGAGTAATTGGGTTATGCATGAATATCGTCTTGAAGGCAAATTCTCTTACCATTTCATCTCAAGAAGCTCCAAGgtacttcgatttaacctttcattagttattttgttgataaagtaaagccttaattttctttgattaataaatttacaatctattatttggaaaaaaaatt...
species | Arabidopsis thaliana |
transcript | AT5G53950.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCGTCTTGAAGGCAAATTCTCTTACCATTTCATCTCAAGAAGCTCCAAG GATGAATGGGTGATCTCTAGGGTTTTCCAGAAAACCACTTTAGCEST: gi|86061083|gb|DR356840.1|DR356840
genomic: ATCGTCTTGAAGGCAAATTCTCTTACCATTTCATCTCAAGAAGCTCCAAGgtacttcgat ... attccttcagGATGAATGGGTGATCTCTAGGGTTTTCCAGAAAACCACTTTAGC
EST: ATCGTCTTGAAGGCAAATTCTCTTACCATTTCATCTCAAGA-GCTCCAAG GATGAATGGGTGATCT
genomic: ATCGTCTTGAAGGCAAATTCTCTTACCATTTCATCTCAAGAAGCTCCAAGgtacttcgat ... attccttcagGATGAATGGGTGATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAGGAAGAGCTCCGAAAGGAGAGAAGAGTAATTGGGTTATGCATGAATATCGTCTTGAAGGCAAATTCTCTTACCATTTCATCTCAAGAAGCTCCAAGgtacttcgatttaacctttcattagttattttgttgataaagtaaagccttaattttctttgattaataaatttacaatctattatttggaaaaaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctttcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa