1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CATCTTATCTGCTAATGGATCCATCATATCTACACCCTCTCCAAAGCCATACCCAAATAAGCCTCCCAAGTGTACCGATTGTGCTCCACTTTTCATGAAGgtatggttttgtcgctttcaaggtagtaatacttgattctgcgttagggatttctgtatacgtagcttgattatcactttgctattggccttctttatct...
species | Arabidopsis thaliana |
transcript | AT5G53850.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCCAAATAAGCCTCCCAAGTGTACCGATTGTGCTCCACTTTTCATGAAG GCATATGAGATGCGAAATGCTGGAGCTGTTATTCACAGTCATGGCATGGAAEST: gi|19876846|gb|AU237677.1|AU237677
genomic: ACCCAAATAAGCCTCCCAAGTGTACCGATTGTGCTCCACTTTTCATGAAGgtatggtttt ... tgtggtgcagGCATATGAGATGCGAAATGCTGGAGCTGTTATTCACAGTCATGGCATGGAA
EST: ACCCAAATAAGCCTCCCAAGTGTACCGATTGTGCTCCACTTTTCATGAAG GCATATGAGATGCGAAATGCTGGAGCTGTTATTCACAGTCATGGCATGGAAEST: gi|86071570|gb|DR367327.1|DR367327
genomic: ACCCAAATAAGCCTCCCAAGTGTACCGATTGTGCTCCACTTTTCATGAAGgtatggtttt ... tgtggtgcagGCATATGAGATGCGAAATGCTGGAGCTGTTATTCACAGTCATGGCATGGAA
EST: ACCCAAATAAGCCTCCCAAGTGTACCGATTGTGCTCCACTTTTCATGAAG GCATATGAGATGCGAAATGCTGGAGCTGTTATTCACAGTCATGGCAT
genomic: ACCCAAATAAGCCTCCCAAGTGTACCGATTGTGCTCCACTTTTCATGAAGgtatggtttt ... tgtggtgcagGCATATGAGATGCGAAATGCTGGAGCTGTTATTCACAGTCATGGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCTTATCTGCTAATGGATCCATCATATCTACACCCTCTCCAAAGCCATACCCAAATAAGCCTCCCAAGTGTACCGATTGTGCTCCACTTTTCATGAAGgtatggttttgtcgctttcaaggtagtaatacttgattctgcgttagggatttctgtatacgtagcttgattatcactttgctattggccttctttatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcgctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccttctt