1 5' 3' | 2 5' 3' | 3 5' 3' |
CTGATACGCTATGGCAATCAGGGCTTTCGAATTTGTTTACTGATATCAAGATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCAAACATTAGATTTTACAGgtttgctgtgccaacttttttgaagtttcattcttttttttactggtagtggtttaattatgggaagatgtgtaaagaatatgttcttgttgttgttctt...
species | Arabidopsis thaliana |
transcript | AT5G51880.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCAAACATTAGATTTTACAG GTATAGTGCTGGTCAACATTTTGGTCGTCACATCGATGAAAGTGCTGATCTEST: gi|19875032|gb|AU235863.1|AU235863
genomic: ATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCAAACATTAGATTTTACAGgtttgctgtg ... tcatgttcagGTATAGTGCTGGTCAACATTTTGGTCGTCACATCGATGAAAGTGCTGATCT
EST: ATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCAAACATTAGATTTTACAG GTATAGTGCTGGTCAACATTTTGGTCGTCACATCGATGAAAGTGCTGATCTEST: gi|116468987|gb|EG511579.1|EG511579
genomic: ATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCAAACATTAGATTTTACAGgtttgctgtg ... tcatgttcagGTATAGTGCTGGTCAACATTTTGGTCGTCACATCGATGAAAGTGCTGATCT
EST: ATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCAAACATTAGATTTTACAG GTATAGTGCTGGTCAACATTTTGGTCGTCACATCGATGAAAGTGCTGATCT
genomic: ATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCAAACATTAGATTTTACAGgtttgctgtg ... tcatgttcagGTATAGTGCTGGTCAACATTTTGGTCGTCACATCGATGAAAGTGCTGATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGATACGCTATGGCAATCAGGGCTTTCGAATTTGTTTACTGATATCAAGATTAGGAGGAAGGTTGCTGTTGGCTTGAATCCAAACATTAGATTTTACAGgtttgctgtgccaacttttttgaagtttcattcttttttttactggtagtggtttaattatgggaagatgtgtaaagaatatgttcttgttgttgttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaagaa