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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATGATGTTCTATAGCAAACAGAGCATGTCTATCCGTGGGGCTAACGTGATCTACAAGCGGATCATTGCACAAGTTGATAAACCTGCAATATATGATGgtactttatttggtttccaacacaacttttgcaaacagagttatgtatttacattttgtgctttgtttatatatcgggtgctctgtctctgctgcag

Basic information

species Arabidopsis thaliana
transcript AT5G51220.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124913358|gb|EH987232.1|EH987232
EST:     GATCTACAAGCGGATCATTGCACAAGTTGATAAACCTGCAATATATGATG                         TATTCAACTTGGAGAAAACATTCAAAA
genomic: GATCTACAAGCGGATCATTGCACAAGTTGATAAACCTGCAATATATGATGgtactttatt ... tctgctgcagTATTCAACTTGGAGAAAACATTCAAAA
EST: gi|124788698|gb|EH878377.1|EH878377
EST:     AATATATGATG                         TATTCAACTTGGAGAAAACATTCAAAATAACGTATTCGCTGCTTGTCCTTC
genomic: AATATATGATGgtactttatt ... tctgctgcagTATTCAACTTGGAGAAAACATTCAAAATAACGTATTCGCTGCTTGTCCTTC
EST: gi|19876603|gb|AU237434.1|AU237434
EST:     GATCTACAAGCGGATCATTGCACAAGTTGATAAACCTGCAATATATGATG                         TATTCAACTTGGAGAAAACATTCAAA-TAACGTATTCGCTGCTTGTCCTTC
genomic: GATCTACAAGCGGATCATTGCACAAGTTGATAAACCTGCAATATATGATGgtactttatt ... tctgctgcagTATTCAACTTGGAGAAAACATTCAAAATAACGTATTCGCTGCTTGTCCTTC