Sequence
atgc intronic sequence ATGC exonic sequenceCATGTCGTATTGGTCTACTTTTTGGTGGCTTTACTGGCTCGTATCATGCCCTTAGATGCTGTTTGAGGAAGTGGAGAAAGAAAGAGACGCCATTGAATTCgtaagtttattttatttatttgtgttgcctaagatttcgattgttgtatctcttttcttataatgcttctactttttactttgtgcatagtgcttgaaaagtatattccttattatgactttgattaagggtggagcag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G51150.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G51150.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA20G34070.1 (Glycine max), 5'ss of exon 2
CATGTCGTATTGGTCTACTTTTTGGTGGCTTTACTGGCTCGTATCATGCCCTTAGATGCTGTTTGAGGAAGTGGAGAAAGAAAGAGACGCCATTGAATTCgtaagtt-----------tatttt----atttatttgtgttgc--ctaagatttcgattgttgtatctcttttcttata---atgcttctactttttactttgtgcatagtgcttgaaaagtatattccttatt-atgactttgattaaggg-----tggagcag
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CATGCCGCATTGGTCTTCTTTTTGGTGGTTTCACTGGATCTTATCATGCTCTTAGATGCTTGTTGCGGAAATTGAGAAAGAAAGAGACACCGGCTAATGCgtaagttgcagctcaaactgttttcttgatttattcttgtagcttctcagttaactatttttttcaagcttttgttatttttaaatagttggatattgttttgctgtttgtgtttgca---cgtgttgcttatttatgactttgtttaaggggatgatggtgcag
upper sequence: AT5G51150.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA10G33510.1 (Glycine max), 5'ss of exon 2
CATGTCGTATTGGTCTACTTTTTGGTGGCTTTACTGGCTCGTATCATGCCCTTAGATGCTGTTTGAGGAAGTGGAGAAAGAAAGAGACGCCATTGAATTCgtaagtt-tattttatttatttgtgttgcctaagatttcgattgttgtatctcttttcttataatgcttctacttt-----ttactttgtgcatagtgcttgaaaagtatattccttatt-atgactttgattaaggg-----tggagcag
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CATGCCGCATTGGTTTACTTTTTGGTGGTTTCACTGGATCTTATCATGCTCTTAGATGCTTGTTGCGAAAATTGAGAAAGAAAGAGACACCAGCTAATGCgtaagttgcagctcaaactgctttctggatttatttttgtagcttctcagttaattttttttaa-gcttttgttttggatattgttttgttgtttgtgtttgca---cgcgttgcttatttatgactttgtttaaggggatgatggcgcag
upper sequence: AT5G51150.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv16s0039g02700.t01 (Vitis vinifera), 5'ss of exon 2
CATGTCGTATTGGTCTACTTTTTGGTGGCTTTACTGGCTCGTATCATGCCCTTAGATGCTGTTTGAGGAAGTGGAGAAAGAAAGAGACGCCATTGAATTCgtaagtttat-----tttatttatttgtgttgcctaagatttcgattgttgtatctcttttcttataatgcttctactttttactttgtgcatagtgcttga-aaagtatattccttatt-atgactttgattaaggg-----tggagcag
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CATGTCGTGTTGGTTTACTTTTTGGTGGTTTTACTGGATCCTATCATGCCCTCCGATGTTTGTTGAGAAAGTTGAGAAAGAAAGAAACTCCTCTGAATGCgtaagtttccaatccttaatatccctttctagtacatgatttgtatttttttaaaacttcattttgtatgttttggaatgatttgaagctgttgatgcatgatagagcctattccatatttatgactttgttaaaggggatgatggagcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125160842|gb|EL188238.1|EL188238EST: CGCCATTGAATTC AGTCTTAGCAGGTTCAGTTGCGGGTTTGTCTATCTTGGCTTTAGATGATTC
genomic: CGCCATTGAATTCgtaagtttat ... ggtggagcagAGTCTTAGCAGGTTCAGTTGCGGGTTTGTCTATCTTGGCTTTAGATGATTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATGTCGTATTGGTCTACTTTTTGGTGGCTTTACTGGCTCGTATCATGCCCTTAGATGCTGTTTGAGGAAGTGGAGAAAGAAAGAGACGCCATTGAATTCgtaagtttattttatttatttgtgttgcctaagatttcgattgttgtatctcttttcttataatgcttctactttttactttgtgcatagtgcttgaaaagtatattccttattatgactttgattaagggtggagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA