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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAATATTCAGAAGGAGGAGGCTAAGAAGAAAGAGGTCCATGTTGAGGAAAATGTGGCAGCACCATCTCCTAGGTCAAACTGTTCGgttaggctcttacttttttctttttcttaaaggttgaaactttcttgatctaaagctattgaattttgccaaatctgggctgattgatggacatttatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G50310.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124788259|gb|EH877938.1|EH877938
EST:     TCCATGTTGAGGAAAATGTGGCAGCACCATCTCCTAGGTCAAACTGTTCG                         CTCACTATAAATCCTTTGAAAGAGACTGAGTTGATACTCTATGGCGGT
genomic: TCCATGTTGAGGAAAATGTGGCAGCACCATCTCCTAGGTCAAACTGTTCGgttaggctct ... atttatgcagCTCACTATAAATCCTTTGAAAGAGACTGAGTTGATACTCTATGGCGGT
EST: gi|124921242|gb|EH994878.1|EH994878
EST:     CCATGTTGAGGAAAATGTGGCAGCACCATCTCCTTAGGTCAAACTGTTCG                         CTCACTATAAATCCTTTGAAAGAGACTGAGTTGATACTCTATGGCGGT
genomic: CCATGTTGAGGAAAATGTGGCAGCACCATCTCC-TAGGTCAAACTGTTCGgttaggctct ... atttatgcagCTCACTATAAATCCTTTGAAAGAGACTGAGTTGATACTCTATGGCGGT