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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAACTGAAGAGTGAGAACTGAGAAGCGATTATGGCGAGCAAGATGAGTCTCCGTTACTCTCTCTTTTTGATCTTCTTCTCTCTCATTTCACTCCAAGgttctccattcatctttctttctcattattgaatgtgctaaaatcatgatctctttgtttccaatctaattccttgtaattggatctgtttatag

Basic information

species Arabidopsis thaliana
transcript AT5G48580.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116482915|gb|EG525507.1|EG525507
EST:     TCTCCGTTACTCTCTCTTTTTGATCTTCTTCTCTCTCATTTCACTCCAAG                         GTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG
genomic: TCTCCGTTACTCTCTCTTTTTGATCTTCTTCTCTCTCATTTCACTCCAAGgttctccatt ... ctgtttatagGTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG
EST: gi|116469680|gb|EG512272.1|EG512272
EST:     TCTCCGTTACTCTCTCTTTTTGATCTTCTTCTCTCTCATTTCACTCCAAG                         GTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG
genomic: TCTCCGTTACTCTCTCTTTTTGATCTTCTTCTCTCTCATTTCACTCCAAGgttctccatt ... ctgtttatagGTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG
EST: gi|86084981|gb|DR380740.1|DR380740
EST:     TCTCTCTCATTTCACTCCAAG                         GTTTTGCCAAGAAGMCCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG
genomic: TCTCTCTCATTTCACTCCAAGgttctccatt ... ctgtttatagGTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAG