1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGCATTACACTGGAACTTTGTTAGATGGTACCAAGTTTGATTCGAGCCGTGACAGAGGAACTCCTTTCAAATTTACTCTTGGCCAAGgtacttttctattttgcaacaatatttgtgaggcctatgtattcggatttggatcggattttttcggattcggataatattataggatcatattaaggct...
species | Arabidopsis thaliana |
transcript | AT5G48570.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGATTCGAGCCGTGACAGAGGAACTCCTTTCAAATTTACTTTTGGCCAAG GACATGTCGTTAAAGGATGGGACTTGGGGATCAAGGCAATGAAGAAAGGTGEST: gi|116454846|gb|EG497438.1|EG497438
genomic: TGATTCGAGCCGTGACAGAGGAACTCCTTTCAAATTTACTCTTGGCCAAGgtacttttct ... gaatggtcagGACATGTCATTAAAGGATGGGACTTGGGGATCAAGACAATGAAGAAAGGTG
EST: TGATTCGAGCCGTGACAGAGGAACTCCTTTCAAATTTACTCTTGGCCAAG GACATGTCGTTAAAGGATGGGACTTGGGGATCAAGGCAATGAAGAAAGGTGEST: gi|116471107|gb|EG513699.1|EG513699
genomic: TGATTCGAGCCGTGACAGAGGAACTCCTTTCAAATTTACTCTTGGCCAAGgtacttttct ... gaatggtcagGACATGTCATTAAAGGATGGGACTTGGGGATCAAGACAATGAAGAAAGGTG
EST: TGATTCGAGCCGTGACAGAGGAACTCCTTTCAAATTTACTCTTGGCCAAG GACATGTCATTAAAGGATGGGACTTGGGGATCAAGACAATGAAGAAAGGTG
genomic: TGATTCGAGCCGTGACAGAGGAACTCCTTTCAAATTTACTCTTGGCCAAGgtacttttct ... gaatggtcagGACATGTCATTAAAGGATGGGACTTGGGGATCAAGACAATGAAGAAAGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCATTACACTGGAACTTTGTTAGATGGTACCAAGTTTGATTCGAGCCGTGACAGAGGAACTCCTTTCAAATTTACTCTTGGCCAAGgtacttttctattttgcaacaatatttgtgaggcctatgtattcggatttggatcggattttttcggattcggataatattataggatcatattaaggct
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacaata