1 5' 3' | 2 5' 3' | 3 5' 3' |
GCTCCAAAACGACATCGATCTCCTTCATCCGCCACCTGAGCTTGAGAAGAGAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCCTTCTTCATGgtactgttttctgttttcttttatgaaatctgatttgtattacatttgatgcgatgaaatgaatctgattctgtattgtttgtgtgatttttttcag
species | Arabidopsis thaliana |
transcript | AT5G47930.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCCTTCTTCATG GATGTTAAGTGTCAGGGATGCTTCAACATEST: gi|47831821|gb|CK121505.1|CK121505
genomic: GAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCCTTCTTCATGgtactgtttt ... tttttttcagGATGTTAAGTGTCAGGGATGCTTCAACAT
EST: GAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCCTTCTTCATG GATGTTAAGTGTCAGGGATGCTTCAACATEST: gi|124905441|gb|EH979521.1|EH979521
genomic: GAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCCTTCTTCATGgtactgtttt ... tttttttcagGATGTTAAGTGTCAGGGATGCTTCAACAT
EST: CAATCTCCCAACTCCTTCTTCATG GATGTTAAGTGTCAGGGATGCTTCAACATEST: gi|164158903|gb|ES102498.1|ES102498
genomic: CAATCTCCCAACTCCTTCTTCATGgtactgtttt ... tttttttcagGATGTTAAGTGTCAGGGATGCTTCAACAT
EST: GCGTCTCGTGCAATCTCCCAACTCCTTCTTCATG GATGTTAAGTGTCAGGGATGCTTCAACATEST: gi|164198700|gb|EL979616.1|EL979616
genomic: GCGTCTCGTGCAATCTCCCAACTCCTTCTTCATGgtactgtttt ... tttttttcagGATGTTAAGTGTCAGGGATGCTTCAACAT
EST: GAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCCTTCTTCATG GATGTTAAGTGTCAGGGATGCTTCAACATAACCAC
genomic: GAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCCTTCTTCATGgtactgtttt ... tttttttcagGATGTTAAGTGTCAGGGATGCTTCAACATAACCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCCAAAACGACATCGATCTCCTTCATCCGCCACCTGAGCTTGAGAAGAGAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCCTTCTTCATGgtactgttttctgttttcttttatgaaatctgatttgtattacatttgatgcgatgaaatgaatctgattctgtattgtttgtgtgatttttttcag
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